Cardiocondyla obscurior: 139109304
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Entry
139109304 CDS
T10704
Symbol
Smc5
Name
(RefSeq) structural maintenance of chromosomes protein 5
KO
K22803
structural maintenance of chromosomes protein 5
Organism
cobs Cardiocondyla obscurior
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobs03400
]
139109304 (Smc5)
DNA repair and recombination proteins [BR:
cobs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
139109304 (Smc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
AAA_29
YfjT_2
AAA_27
SMC_hinge
Motif
Other DBs
NCBI-GeneID:
139109304
NCBI-ProteinID:
XP_070524351
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All DBs
Position
LG17:3584067..3663778
Genome browser
AA seq
1046 aa
AA seq
DB search
MTDDMERGVITHIHLENFITYNEINIKPGRYLNVIIGPNGSGKSTIVSAIVLGLGGKPNI
IGRALHIGEFVKYGQNKAKIEIHLKNDSNKDSVITRTFTKDGTSTWMINGNQANVKAVQK
FTESFNIQINNLCQFLPQDKVQDFSKMDAQALLENTERSVGDSNLFEYHVKLKENRANFK
KLQTDINNTKRLLESKVQRRDALQQIVATIKERKLIKKKIITLKQKKAWILYDQMRRKLL
ESKKTRDKAVRDMQVIDEELKPMKKKIEEINGNIAILKTELNDHNKNVQAKNKKLRNIMN
EILNCENSIKEAEHTCSRKIQMEQTRDQDIKLAQQQKCKLENDLSLMIDEVGSEESLKKE
LINLATNMENHRKKINHFTNKNITLKHEDESISREIRALQAELQSFNIDMKRLELLKQRD
INAYKAALWLKENLDKFSATVHQPMFLTINVKEASYAKYLENIIPFRDLIAFTCEDKQDM
NLLLKYLREQQKLQVNVVHSDPIKNISLQPRIPMENIKQFGFKYYLAELIEVPPSILKYL
ISMYQLNNIPVGTSEIENNTSYIPNNLNCYFSENNMYSVKISKYTHETSTSISRINGNGM
LSIVLDKSKLQKLQERLRKLQENKNQTLSYIKEMEDKIREETNILDEYRANKNKFQQNIQ
NIQALKSRIHIATDKIKQLETAHTNIEDIKALYTKEIKAIINKQLRMYKEYNTVLQECFN
YNTNNVEIKIAVTLLQQTLISKENAVHELKDKFATAEKMFKQHDNEFQPLKKEAERLYSE
ALLSTNNLSPQDDAFKPLNKAFEKLPATINEINNELTVAQAKVFCMAKNMDTENVLLEYE
DLQNYVQKLNEYIKKNNAALEKITKEIEELKEKWLIPLELLVEKINRNFSSYFFAMDCAG
EVTLSHGENALDFDQYGLKIKVKFRDADELQELTRHFQSGGERTVTTAIYMIALQELSRV
PFRCVDEINQGMDAMNERRVFDLLVKITGRPGSSQYFLLTPKLLPDLTYAETVTVHCVFN
GLVKTDDEKFEFDVEDYCNYLISSAN
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgactgatgatatggaaagaggtgttatcactcatatacatttggagaactttataact
tataatgagataaacataaagcctggaagatatcttaatgttattattggacctaatggc
tcgggcaagtcaaccattgtttctgctatagttcttggtttgggtggcaagcctaatatt
attggacgtgctcttcacataggggaatttgtgaaatatggacagaacaaagcaaagata
gaaatccatctgaaaaatgattctaacaaggattctgtaataactagaacatttactaaa
gatgggacatctacatggatgattaatggcaaccaagcaaatgtaaaagctgtccaaaaa
tttacagagagttttaatattcaaatcaataatttatgtcagttcctgccacaagataaa
gtacaagatttctcaaaaatggatgctcaagcgttactagaaaacacagaaagatctgtt
ggagattcaaaccttttcgagtatcatgtaaagttgaaagaaaatagagccaattttaag
aagttacagactgatataaataacacaaaacggttattagaatccaaagtacaaaggcgt
gatgcgttacaacaaattgttgcaacaataaaagagagaaaattgataaagaaaaaaata
ataacgttgaaacaaaaaaaagcatggattttgtacgatcaaatgcgaaggaaattactg
gagtcaaaaaaaaccagggataaagcagtaagagacatgcaagtaatagatgaagaatta
aaaccaatgaaaaaaaaaattgaagaaataaacggtaacatagcaatattaaaaactgag
ttaaacgatcacaacaaaaatgttcaggctaagaataaaaaattaagaaacataatgaat
gaaattcttaattgtgaaaattcgatcaaagaggctgagcatacttgttctcgaaaaatt
caaatggaacagactagagatcaagatattaaacttgcgcagcaacaaaaatgcaaactc
gaaaatgacttatctcttatgattgatgaagttggatcagaggaaagtctaaaaaaggaa
ttgataaatttagcaactaatatggaaaatcatcgaaaaaaaattaatcatttcacgaat
aaaaatattacattaaaacatgaagatgaaagtattagtcgtgaaataagagctttgcaa
gcggagcttcaaagtttcaacattgatatgaaacgtttagaactgttaaaacaaagagat
ataaatgcatataaagctgcgctttggttaaaagagaatttagataaattttcagcaaca
gtgcatcaacccatgtttctcaccattaacgtaaaagaagcttcgtatgctaaatattta
gaaaatataataccgttccgggatttaattgcatttacatgcgaggataaacaggatatg
aatttattattaaagtatttaagagaacagcagaaactccaagttaatgtggtacattct
gatccaataaaaaacatctcgttgcaaccgcgtataccaatggagaacataaaacaattt
ggttttaagtattacttagcagaacttatcgaagtaccaccatctatattgaaataccta
atctcgatgtatcagctgaataatattcctgtaggaactagtgaaatcgaaaataataca
agttacattcccaacaatttaaattgttattttagtgaaaacaatatgtattccgtaaaa
atatctaagtatacgcacgaaacgtcaactagcatatctcgaatcaatggaaatggaatg
ctgtctattgttttggataaatctaaattacaaaaacttcaagaacggttaagaaaatta
caagaaaataagaatcaaactttaagttatatcaaagagatggaagataagatacgtgaa
gagactaatatattagatgaatatagagccaataaaaataaatttcaacaaaatattcag
aatattcaagcattaaaaagtagaatacacatagctacagataaaatcaaacaattggaa
acggctcacacaaatatcgaagatatcaaagcattatataccaaagagattaaggccatt
ataaataagcaactgcgaatgtataaagagtataatacagttttgcaagagtgttttaat
tacaatacaaataacgtagagattaaaattgcagtaacgctgctgcaacaaactttaata
agcaaagaaaatgcagttcatgaattaaaagataaatttgcaacagctgaaaaaatgttt
aagcaacacgataatgagtttcaacctttgaagaaagaagctgaaagattatatagcgaa
gcattattgagcacaaataatcttagtccacaagatgatgcatttaagcctttaaataaa
gcttttgaaaaattaccagctactatcaatgaaataaataatgagttaactgtcgctcaa
gccaaagttttttgtatggctaaaaatatggacactgaaaatgtacttctagaatatgaa
gacttacaaaattatgttcaaaaattaaatgaatatattaaaaaaaacaatgctgcacta
gagaaaataacgaaagaaattgaggagttgaaggaaaagtggttaatacctttggagctg
ttggttgaaaagataaacagaaattttagttcttattttttcgcgatggattgcgctgga
gaagttacactctcgcatggtgaaaatgctttggatttcgatcaatacggcttaaagatc
aaagtaaaattccgtgatgctgacgaattgcaagaattaacaagacattttcagagcggt
ggcgaaagaacagtgactaccgcaatttacatgatagctttgcaagaattatcacgtgta
ccgtttcgctgtgtggatgaaattaatcagggaatggacgcaatgaacgaaagacgtgtc
tttgacttactcgtcaaaataacagggagaccaggcagttcccaatattttttacttacg
ccaaaactcttgcctgacttaacatatgctgagacagtgacagttcattgcgtttttaat
ggattggttaaaacagacgatgaaaagttcgagtttgatgttgaggattattgcaattat
ttaatatcgtcagctaattaa
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