Cardiocondyla obscurior: 139109828
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Entry
139109828 CDS
T10704
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03008
Ribosome biogenesis in eukaryotes
cobs03013
Nucleocytoplasmic transport
cobs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139109828
03015 mRNA surveillance pathway
139109828
03008 Ribosome biogenesis in eukaryotes
139109828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139109828
03009 Ribosome biogenesis [BR:
cobs03009
]
139109828
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139109828
mRNA cycle factors
Stress granule specific factors
139109828
Ribosome biogenesis [BR:
cobs03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
139109828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
TAP_C
NTF2
LRR_4
Tap-RNA_bind
LRR_8
Motif
Other DBs
NCBI-GeneID:
139109828
NCBI-ProteinID:
XP_070525290
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All DBs
Position
LG18:4103158..4105823
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AA seq
529 aa
AA seq
DB search
MMYQKTMQVPNTPPSVIIDTAIAIRIAMGSKMPHERSMMSNPDLWHKIKIVKGGLYDKET
ILRGILKAVEPHDLLPVRYQSCGENAYFVTRNCAPALEVLCKLNMIFTNTKGDANVVVIT
LGYTTTDILNVPIEGFLSSVLSKRYDIHEKKLDLENFHTDEDLDKHMYCPLSQLGNLNFV
LKLAKSSITTIEYLNLQHNELIDISAIDNSKLLSIKYLDLRHNKMLNMSALAPVMHLPIM
KLWLDGNPLCDNYSTAKQYLDSAKRYCSYLEELDGVRVEQNIPLIYKDYVRNDSSQHFMH
KFVSHFFALFDQLDRNCLRGLYRNNSFYSMSFAIPHTIAQKNGLTQYTFNRNLLKKGPKK
NIGIFVGQEHILMGFTKLPRSYHDKSSFTYDMIHDDGKLIVFSVSGLLKKLTSGMYVLAF
NRTFVLMATLDNEYYILNDQYHIYATPAPIPPDKIKVKYCYDENDPVCFSASEKAVLITR
LQQITKMNKEWCHTCLSVAQWDMRKTILTFMKDLRNSMIPDNAFNVDSK
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgatgtaccaaaaaactatgcaggtgccaaacacaccaccttctgttataatcgacact
gcgattgctataagaatagctatgggttcaaaaatgcctcacgagagatcgatgatgagc
aatccggacttgtggcataaaataaaaattgttaaaggtggcctctacgataaagaaact
attttgagaggtattttgaaggcagtggaaccacacgatttattaccagtaagataccaa
agttgcggtgaaaatgcgtattttgtaactagaaactgtgcccctgcgctggaagtatta
tgcaagctgaacatgatttttacaaatactaaaggcgacgctaacgtagttgtgattacc
ctgggatatactacgaccgatattctaaacgttcctatcgaaggatttctatcgagcgtg
ttatccaagagatacgatatacacgagaagaaactggacttggaaaacttccacacggac
gaagatctagataagcatatgtattgcccgctgtcgcaactcggaaacttaaattttgtt
ttgaaattggccaagtcttcgataaccacgattgaatatcttaatttacagcataacgag
ctaatcgacatatcggcgatagacaattcaaaattgttatccatcaaatatctagacctc
aggcacaataaaatgttaaacatgagcgcgctagctccggtcatgcatctaccgatcatg
aaactgtggctcgacggtaatccactttgcgacaattactcgaccgcgaagcagtactta
gactccgcgaaaaggtattgctcgtacctggaggagctggacggcgtgcgcgtcgaacaa
aatataccgttgatatacaaggactacgttcgtaacgacagttcgcaacatttcatgcat
aagttcgtctctcacttcttcgctttattcgatcagctcgaccgaaactgtttacggggg
ctttatcgcaataactcgttttattctatgagcttcgctatacctcacaccatcgcgcag
aagaacggtctgactcaatacacgttcaacagaaatctattaaaaaaaggacccaagaaa
aacataggcatcttcgtcggtcaagagcacatcttgatgggtttcaccaaattgcctagg
tcctaccacgacaaaagttctttcacgtacgatatgatacacgacgacggcaagcttata
gtgttcagcgtttccggattgttgaaaaaattaacttccggcatgtacgtgctcgcattt
aacaggacattcgtcttaatggcgaccctcgacaacgagtattacattttaaacgatcag
tatcacatatacgctacgcccgcacccataccgcccgataagatcaaagtcaaatactgt
tacgacgaaaatgatccggtttgcttcagcgcgagcgagaaagcggtgctgattaccaga
ttgcagcaaataactaagatgaataaagaatggtgccacacttgtctatcagtcgctcag
tgggacatgcggaagactatattgacttttatgaaagatttaagaaactcgatgataccg
gacaacgcatttaatgtagactcgaaatga
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