Cardiocondyla obscurior: 139110643
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Entry
139110643 CDS
T10704
Symbol
Prp8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139110643 (Prp8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cobs03041
]
139110643 (Prp8)
Spliceosome [BR:
cobs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139110643 (Prp8)
Complex C
U5 SnRNP specific factors
139110643 (Prp8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
139110643
NCBI-ProteinID:
XP_070526651
LinkDB
All DBs
Position
LG21:2002416..2022875
Genome browser
AA seq
2372 aa
AA seq
DB search
MSLPPYLLSPNPWATMMAQQQAQQIAAQVHAQAAAHAQAAHHAHMQAIAGPPLPQIPKQP
EVLSEDKLQEKAQKWQQLQSKRFAEKRKFGFVDAQKEDMPAEHIRKIIRDHGDMSSRKYR
HDKRVYLGALKYMPHAVMKLLENMPMPWEQIRDVKVLYHITGAITFVNEIPWVIEPVYIA
QWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVEPLEAIQIELDSEEDES
VASWFYEHKPLVGTKHVNGSTYRRWNLTLPQMATLYRLANQLLTDLVDQNFFYLFDPKSF
FTAKALNMAIPGGPKFEPLVKDSNAADEDWNEFNDINKIIIRQPIRTEYRIAFPYLYNNM
PHFVHLSWYHAPNVVYIKTEDPDLPAFYFDPLINPISHRNSLKTIEPQIEDDEDFILSGE
VQPFLQEIPLYTDNTANGIALLWAPRPFNTRSGRTRRAIDIPLVKSWYREHCPPGQPVKV
RVSYQKLLKYFVLNALKHRPPKPQKKRYLFRSFKSTKFFQTTTIDWVEAGLQVCRQGYNM
LNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIIDSHVQ
YRLNNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGK
GPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDL
ELRASVMHDIVDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPSPIENMILRYV
KMKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISP
EEAVAIFTTSVHWLESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREE
LGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYDVEPLEKITDAYLD
QYLWYEADKRRLFPPWVKPADTEPPPLLVYKWCQGINNLQDVWDVSEGECNVLLESKFEK
LYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIAQY
YGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDVASETAHPIRLYCRYVDRIHLFLRFSA
DEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPR
STTTIQWENSFVSVYSKDNPNLLFNMSGFECRILPKCRTTHEEFTHRDGVWNLQNEITKE
RTAQCFLRVDDESLQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQE
LLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWS
KQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRL
TLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGK
LWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQR
SGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQ
KVHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFSAYKWNVSRPS
LLADSKDVMDNTTTQKYWIDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLI
AIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEPYL
SSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIH
TSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIV
IKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL
HVNTERTKVVLKPDKTTITEPHHIWPSLTDDEWIKVEVQLKDLILADYGKKNNVNVASLT
QSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITATTSNYE
TQTFSSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQ
IAGYLYGISPPDNPQVKEIRCIVMAPQWGTHQTVHLPNTLPNHQYLKEMEPLGWIHTQPN
ELPQLSPQDISTHARIMAENSIWDGEKTIVITCSFTPGSCSLTAYKLTPSGFEWGKQNTD
KGNNPKGYLPSHYEKVQMLLSDRFLGFFMVPSQGSWNYNFMGVRHDPNMKYELQLANPKE
FYHEVHRPAHFLNFSSLEDGDGVGADREDMYA
NT seq
7119 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccaccgtatttgttgagcccaaatccatgggccacaatgatggcccagcaa
caagcccaacaaatagcagctcaagtacatgctcaggctgctgcacatgcacaggctgcc
catcatgctcatatgcaggctatagctgggccaccactgcctcagatacctaagcagcca
gaagtcctgtcagaagataaacttcaggagaaagcacaaaaatggcagcaactgcaatca
aaacgatttgccgaaaagagaaaattcggctttgtggacgctcagaaggaagatatgcca
gctgagcatatacgaaaaattattagagatcatggggatatgagcagtcgaaaatatcgg
catgacaagcgtgtttatttgggtgcattgaaatatatgccacatgctgttatgaaactg
ctggaaaatatgcctatgccctgggaacaaataagagatgtaaaggttttgtatcatatt
accggagctataacattcgtcaatgaaattccttgggttatagaacctgtgtacatagct
caatggggcaccatgtggattatgatgaggcgagagaaaagagaccgtaggcattttaaa
agaatgagatttccacctttcgacgacgaggaacctcctctagattacgcggataacgtt
ttggatgttgaaccattagaagctatacaaatcgaacttgattcggaggaagacgaatca
gttgcgtcatggttttacgaacataagcctttagttggaacgaagcatgttaatggatcc
acatatcgaagatggaacttgacacttccgcaaatggccactttgtatcgcttggctaat
caattgttaaccgacttggtggatcaaaatttcttttacctgtttgatcctaaatcattc
tttactgcaaaggccctgaatatggctatccctggaggacctaaattcgaaccattggta
aaagattcaaatgctgctgatgaagattggaacgaatttaacgatataaataaaataatt
atcagacagcctattagaacggaatataggattgcatttccatatttgtacaacaatatg
cctcactttgtccatctttcgtggtatcacgcaccgaatgtcgtatatataaaaactgaa
gatccagatttgcctgcattctattttgatccattaattaatccgatctctcatagaaat
tcattaaaaacgatagaaccacaaatcgaagatgatgaagattttattttatctggtgaa
gtgcaaccgtttcttcaagagataccgctttacaccgataacacagcgaatggaatagcg
cttttatgggcaccaaggccatttaacacacgttccggtagaacgagaagagccatcgat
atcccattagtcaagtcgtggtacagagagcattgtccgcctggccaacctgtgaaagtg
cgagtcagttaccaaaaattgcttaagtactttgtacttaacgctttgaagcacagacca
ccgaaaccgcagaaaaaacgttatttattccgttcgtttaaatcaaccaagttcttccag
acgacgacaatagattgggtggaagctggtctgcaagtttgtcgtcaaggatataacatg
ttgaatttattgatacatcggaaaaatctgaactatctccatttagattataattttaat
ttgaaacctgtcaaaacgcttacaacgaaagaaagaaagaaatcgcgttttggtaacgcg
tttcatttatgtcgtgaaattcttcgtttgactaaacttattatcgattctcatgtacaa
tatcgactaaataatgttgatgcttttcaacttgcagatggattacaatatatttttgca
cacgttggtcaattgaccggcatgtatcgatacaaatataaattaatgcgacagattagg
atgtgcaaggatttaaaacatctgatttattaccgttttaataccggcccggttggcaaa
gggcctgggtgtggattctgggcacctggctggcgcgtctggctatttttcatgagaggc
attactccactgttagagagatggcttggtaatttattgtcgagacaattcgaaggtcgt
cactcgaaaggtgtggcaaaaacagtaacgaagcaacgagttgaatcgcattttgatctt
gaattgcgagcatccgtcatgcacgacatagtggacatgatgcccgaaggaataaagcaa
aataaagcgcgaactattcttcaacatttgagcgaggcttggcgttgttggaaagcaaat
attccgtggaaggtgccaggtttgccaagtccgatcgagaatatgatattgcgttacgtc
aagatgaaagctgactggtggacgaacactgctcattacaatcgagagagaattcgacgt
ggtgctacagtagataaaaccgtatgcaagaaaaatcttggccgcttgacgcgtctctat
ttgaaagctgagcaagaacgacagcataattatttaaaagacggtccgtatatatcgccg
gaagaagccgtggctatatttactacctcggtgcattggctggagtcccgaaggtttgca
ccaataccttttccgcctctgtcttataagcacgatacaaagttgctgatattagctttg
gaacgtttgaaggaagcttatagcgttaaatctagattaaatcaaagtcaacgagaagaa
ttaggtttgatagaacaagcgtacgataatccacacgaggcgctatccagaattaagaga
catttactgacacagcgagctttcaaagaggttggcattgaattcatggatctttacagt
catttaattcccgtatacgacgtagagcctcttgagaaaatcacggatgcttatctcgat
caatatctgtggtatgaggcagataaaaggcgattatttccaccatgggttaaaccggca
gacacagaaccgccgccgcttctcgtttacaaatggtgtcaaggtattaataatcttcaa
gatgtatgggatgtcagtgaaggcgaatgcaatgttttactcgaatcgaaatttgagaaa
ttatatgagaagatcgatcttacgctgcttaacagactgttgcgtctgatagtcgatcat
aatatcgccgattatatgactgcgaaaaataacgtagttattaattataaagatatgaat
catactaacagctatggcattattagaggattgcaattcgcatcttttatcgctcaatat
tatggattggtgttagatttgctcgttttaggccttcaacgagctagtgaaatggctggc
ccgccgcaaatgccgaacgattttttgacgttccaggatgtcgcctctgaaacggcgcat
cccattcgattatattgtcgctatgtcgatcgaatacatctgttcttacgtttctctgcc
gatgaagctagagatcttattcagcgttatctcactgagcatcccgatccgaataatgag
aacattgtcggatataacaataaaaaatgttggccacgagatgctcgtatgagattaatg
aagcacgatgtgaatctgggccgggcagttttttgggatatcaagaatcgattaccgcgt
tccaccaccactattcaatgggaaaacagtttcgtcagtgtttatagcaaagataatcca
aatttattatttaacatgagtggctttgaatgcagaattttgcccaagtgtagaacgaca
catgaggagttcacgcatcgagacggcgtctggaatcttcagaacgaaatcacgaaagag
agaacggcacaatgttttctgcgcgttgacgacgagagcttacagcgtttccataatcgc
gtcaggcaaatcttgatggcttcaggttcgacgactttcacgaaaatcgtgaacaagtgg
aatactgcattgattggtttaatgacatatttcagagaggcagttgtaaatacgcaagag
ctgttagatctgttagtaaagtgcgagaataaaatacaaacgcgtatcaaaattggatta
aattctaaaatgccttcgcgttttccacctgttgttttttacacgccaaaggaactgggc
ggtctgggaatgttatcgatgggccacgtattaataccgcaatcagatttgaggtggtcg
aaacaaaccgatgtaggcatcactcacttccgttcgggtatgagccacgacgaagatcaa
ctaattccaaacttgtatcgttacatacagccatgggaatcggaatttatcgattctcaa
cgcgtctgggcggagtacgctctgaagcggcaagaagcaaatgctcagaatcgcaggctc
actttagaagatcttgaagacagctgggatcgtggcattccgagaataaatacgctattt
caaaaagatcggcacacgttagcttatgacaaaggctggcgcattcgtacggaatttaaa
caatatcaagtattgaagcagaatccgttttggtggactcatcagcgtcacgatggcaaa
ttgtggaatttaaataactatcgtaccgatatgattcaagcgcttggcggtgtcgaaggc
attttggaacacactctctttaaaggcacttattttccaacgtgggaaggtctgttttgg
gagaaagcttccggtttcgaagagtcgatgaaatataaaaagctgactaacgctcaacgt
tccggtctcaatcagattcccaatcgtcgatttactttgtggtggtcacctacgattaac
cgagccaacgtatacgttggttttcaggtccagttagatctgacaggaatatttatgcac
ggaaaaataccgactctgaagatttcattgattcagatattccgcgctcacttgtggcaa
aaagtacacgaatctatcgtgatggatctctgtcaagtgttcgatcaagaattagacgcg
ctagaaattgaaactgtacagaaggaaacgatacatccgcgaaaatcttataaaatgaat
tcttcatgcgcggatattctattattttcagcttacaaatggaatgtatcccgcccgtct
cttctcgccgattctaaagatgtaatggataatacgaccacgcaaaaatattggattgat
gttcagctaagatggggcgactacgattcacatgacatcgagcggtacgctcgtgcgaaa
ttccttgattatactacagataacatgtccatttatccgtcacccacaggtcttttaata
gcaattgatctggcatataatttacatagcgcctatggaaattggttccccggctgcaag
ccgcttatacagcaagctatggcaaagattatgaaagcgaatccagctttgtacgtgcta
cgtgaacgtattcgaaaagcattgcaattatactcgtcagaaccgacagagccttatctc
tcctcgcaaaattacggcgagcttttctcaaatcaaattatatggttcgttgacgacaca
aatgtatatcgcgtaacaattcataaaacatttgaaggtaatttaacaacgaagccgata
aacggcgcaattttcatctttaatccacgcacggggcaactcttcttgaagattattcac
acttctgtctgggcgggacaaaagcgtttaggtcaattggcaaaatggaaaaccgctgaa
gaagttgctgcgttgattcgttctctgccagtagaagaacaaccgaaacaaattatcgtc
accagaaaagggatgttagatccattggaagtgcatttactcgactttcctaatatagtt
atcaagggatctgagttgcagttaccgttccaagcatgtcttaaagtagagaaatttggt
gatctcattttaaaggcaactgaaccacagatggtgctttttaatctttatgacgactgg
ttaaagaccatctcgtcttacaccgcattctcgcgattaattttgattttacgcgctctg
cacgttaacactgaaagaactaaagttgttcttaaacctgataaaaccaccatcaccgaa
ccgcatcacatatggccgtcgttgactgacgatgaatggattaaagtggaagtgcaactt
aaagatttaattctcgcagattacggcaaaaagaacaacgtcaatgtcgcctcgctcacg
caatctgagatccgtgatattattttgggtatggaaataagcgcgccgtccgcgcaacgg
caacagatcgccgaaattgagaaacaaactaaagagcagagccagttgactgcaactacc
acacgaacggtgaacaagcacggcgacgagatcattaccgcaaccacgtctaattatgag
acgcaaactttcagctcgaagaccgaatggcgagtacgtgcgatttcagcaaccaatctt
catttaagaacgaatcatatttacgtttcatccgacgatattaaagagaccggctatact
tatattttacctaaaaatgtgctcaaaaagtttgtcactatttccgatctgcgagcgcaa
atagctggatatttatacggcatcagtccacctgataatcctcaggtaaaagaaataaga
tgtattgtcatggcaccgcagtggggaactcaccagacagttcatttgcctaatacgtta
ccgaatcatcagtatttaaaggagatggaaccattaggatggatacacacgcaaccaaat
gaattaccacaactatcaccacaggatatatccactcacgctcgaattatggctgaaaat
tccatttgggacggtgaaaaaaccatcgttatcacttgcagtttcacgcccggctcttgt
tcactcacagcgtataaattaactccgagtggttttgagtggggcaaacaaaacactgat
aaaggcaacaatccgaagggttacttacctagccattacgagaaggtgcaaatgcttctg
tccgatcgcttccttggtttctttatggtacccagtcaaggctcgtggaactataatttc
atgggcgtgaggcacgatcctaatatgaagtatgagttacaactggcgaatccaaaggaa
ttttatcatgaagtgcacagaccagctcacttcctcaatttctcaagcttggaagacggt
gacggagtcggagccgaccgagaggacatgtatgcgtaa
DBGET
integrated database retrieval system
