Cardiocondyla obscurior: 139110686
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Entry
139110686 CDS
T10704
Symbol
Upf3
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03013
Nucleocytoplasmic transport
cobs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139110686 (Upf3)
03015 mRNA surveillance pathway
139110686 (Upf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139110686 (Upf3)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139110686 (Upf3)
mRNA cycle factors
P-body specific factors
139110686 (Upf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
NlpE
Motif
Other DBs
NCBI-GeneID:
139110686
NCBI-ProteinID:
XP_070526718
LinkDB
All DBs
AA seq
593 aa
AA seq
DB search
MTEEAQQPESAVQTDSCSVQNDTQTNSSDVGKTKDNKKEKCRPITKVVIRRLPPTMTQDQ
FLEQVSPLPEHDYMYFVKADMSLGQFAFSRAYINFIEQQDIFMFREKFDNYVFVDAKGVE
YPAVVEFAPFQRLPKKRVGKKKDLKCGTIESDSYYMSFLENLKNQDIDPSVAQSKTEYSY
QPPDNTVKKITTTPLLEYLKLRKQEKQRLRDEKREERRRRDIERRRTKDDPVISKVLRNP
DLDKDLNKDDKENKDERDKLSPKDLKNRNKRDDKIREKPARDREIKPIIKGYRERIDDRN
KEREIKQRRYDEKKSYSRRDEREERRIDLRDDKRYEMKEEYRESRDRKIEERRGKSYEKM
RQEKKKLAETKKQISDIVEDDPNSKKIKEEHEIVQTRENENDKEPVYNGDELRQKDHECE
QRILEDRITIDAVQNCQDNVEEANGSVSTDPNDEDDSEDKESKVVKRRNSFESNGEGGSG
DGNCLRRHKSLDGGGQSNLQKNDGEEKEKDKKDPRLERRIRNKDRPAMEIYRPGMGKFSK
QRLEREKSNDERASLSQSPTPNPGVSSATGKPGKIGATEVRSMTFKRSITRDA
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagaagcgcagcagcccgagagtgccgtgcagaccgacagctgttctgtacag
aatgatacgcagacgaattcgtcggatgtcggaaaaaccaaagataacaagaaagaaaaa
tgtcgtccaataacgaaggtggttatcagaaggctacctccaacgatgacgcaagatcag
ttcttagagcaagtttctcctttgccagaacacgactacatgtacttcgtcaaagctgat
atgtccctcggccaatttgcattttctcgcgcgtacattaatttcatagagcagcaagac
atctttatgtttcgagagaagttcgataattatgtattcgtagatgctaagggggtggaa
tatcctgcagtggtggagtttgcaccatttcagagattgccaaaaaaacgagtcggcaag
aagaaggatctcaaatgtggcactatcgagagcgactcgtattatatgagttttttagaa
aacttaaaaaatcaggatattgatccaagtgtagctcaatcaaaaactgaatattcttac
caaccaccagacaatacagtgaagaaaatcacaacaactccgctgctcgagtatttgaaa
cttcgtaaacaggaaaagcagcgtcttagagacgaaaagcgtgaagaaagacgacggaga
gatatagaaagacgaaggactaaagatgatcctgttatctccaaggttttaaggaatcca
gatttggataaagacttgaacaaagacgataaagagaataaagacgaaagagacaagctt
tcgccgaaagatttaaaaaatagaaataaaagagacgataagataagagaaaaaccagcc
cgagatcgtgaaattaaacctattattaaaggatacagagagcgtattgacgatagaaat
aaagaaagagaaatcaaacaacggcggtacgatgagaaaaagtcttatagcaggcgtgac
gaaagagaggagagaagaattgatctccgagatgacaaaaggtacgaaatgaaagaagaa
tacagagaatcaagagacagaaaaatcgaagaaagacgagggaaaagttatgaaaaaatg
cggcaggagaaaaagaaattggcagaaaccaagaagcaaattagtgacattgttgaggat
gatccgaattcaaagaaaataaaagaagagcatgaaatcgtacagacaagagaaaatgaa
aatgataaagagcccgtgtataatggagatgaattaagacaaaaagaccatgaatgtgaa
caacggattctcgaggacagaataacaatagacgctgtacagaattgtcaggataatgta
gaagaggcgaacggatcagtcagcacagatccaaacgatgaggacgactccgaagataaa
gaatcgaaagttgtcaaaaggcgtaattctttcgaaagtaatggtgagggtggttcaggt
gacggcaattgcttacggcgtcacaagtcattggacggaggaggtcagagcaaccttcaa
aagaatgacggcgaagaaaaagaaaaagataagaaagatccacgactagaacgtaggata
cgaaataaggatcgtccggcgatggagatttacagacctggcatgggtaaatttagcaag
cagcgtctcgaacgcgaaaaatccaacgacgaaagggcttccttatcacagagtccaaca
ccaaatcctggcgtctcttcggcaactggcaagcccggaaaaattggggcaacagaagta
cgctcgatgacatttaaacgtagtatcactcgcgacgcataa
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