Cardiocondyla obscurior: 139111127
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Entry
139111127 CDS
T10704
Symbol
Rat1
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03008
Ribosome biogenesis in eukaryotes
cobs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139111127 (Rat1)
09123 Folding, sorting and degradation
03018 RNA degradation
139111127 (Rat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobs03021
]
139111127 (Rat1)
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139111127 (Rat1)
03009 Ribosome biogenesis [BR:
cobs03009
]
139111127 (Rat1)
03016 Transfer RNA biogenesis [BR:
cobs03016
]
139111127 (Rat1)
Transcription machinery [BR:
cobs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139111127 (Rat1)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
139111127 (Rat1)
Ribosome biogenesis [BR:
cobs03009
]
Eukaryotic type
Pre-60S particles
RNases
139111127 (Rat1)
Transfer RNA biogenesis [BR:
cobs03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
139111127 (Rat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
139111127
NCBI-ProteinID:
XP_070527348
LinkDB
All DBs
Position
LG22:4129823..4152362
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AA seq
958 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVECVEQKSISSDGTCIPVNSAEPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPAPKDEDEMMEAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETSEKINEIERIRSELVLKGASLPPEKPKEAHFDSNCITPGTPFMARLSACLHYYIH
ERLNNDPGWRNIKVILSDANVPGEGEHKIMDFIRRQRAQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNKPKPCDICGQLGHEMRDCTGAEPNQKSEENTYGSECQFIFV
RLNVLREYLERELYMPNLPFKYDFDRALDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLV
ALYKKAVYKTGGFLTDSGDVNLDRVQLIMSDLGDVEDEIFKKRQQNELAFKQREKDKKKR
NEIVSNFKPMWIPAGQFAPTVPGKKVKPIENARYEAFKMRVLGRNYNTNAAEKTNANQAL
ESMLTPEDKGNTSKGQKRKIDEVSATDDSDDDQAHDEVRLWEDGFKDRYYESKFDVSPDN
LAFRNNVALQYVRGLCWVLRYYYQGCASWRWYFPYHYAPFASDFINIGGLSTEFEKDTEP
FRPLEQLMGVFPAASRKHVPEPWAKLMTDPKSQIIDFYPEDFKIDLNGKKFAWQGVALLP
FVDEKRLFKALASYYDCLTEAEKKRNVRGNDRLYVGIENEGYDFIKGLYTNRVESDKEVE
ISIEGMRGTVLLSDDCISDGGTLPSPVRGLPVRNNKVYCIKFKDPMYGSNHIFLARKLKG
AKEPPRVLKPQDFEAMNRKNGSQWVPQTGFTRSTQSASLGQAGHRMLDHHMNHNSRSGSF
ANVPPPVNLYQPYHGYRSDYQSGYGYSSAGSSQMRGPWGSGYGMRQSNYPSSEYQHYRNQ
YDNRQQSQRSGANYQSAQHGYHSPRNYSSSRGGGSGGGGGGGGGGGGGGHRDGWRRTM
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccagcattttttcgttggctaagccgaaaatatccctccgtaatcgtcgag
tgcgtcgagcaaaagtcaatatcctcagatggaacatgcattcctgtaaattcggcagaa
ccaaatcccaatggggtggaatttgataatttatatcttgacatgaacggtataatacac
ccttgtacacatcctgaggataaaccagctcctaaggatgaggatgaaatgatggaagct
atttttgaatgtattgatcgattatttcgtattgttagaccaaggaaattgctttatatg
gcaattgatggagttgctcccagagctaaaatgaatcaacaaagatctcgaagatttcga
gcatctaaagaaacatcagaaaaaatcaatgaaatagaaaggatacgttcagagttggtt
ctcaaaggagcatccttaccaccagaaaaaccaaaagaagcacattttgatagcaattgt
attacaccgggcacaccgtttatggcaagattatcagcatgcttacattattacattcat
gagcgtttaaataatgacccaggttggaggaatattaaagtaatattaagtgatgctaat
gttcctggtgaaggagaacataaaataatggattttatacggcgacaaagagcacaaccc
gatcatgatcctaatacgcaacacgttttatgtggagcggatgctgatttaattatgtta
ggcctcgctacgcacgaacctaattttactattattcgtgaagaatttaaaccaaacaag
ccaaagccatgcgatatatgtggtcagttagggcatgaaatgcgtgattgtacgggcgcg
gaaccaaatcagaaatcagaggaaaatacatacggatccgaatgccagtttatattcgta
cgattaaacgttctccgagaatacttagaaagagaattgtatatgccaaacctaccattc
aaatatgattttgatcgagctctcgatgattgggtgtttatgtgtttcttcgtaggaaat
gattttttaccgcatcttccctctttggaaattagagaaaacgcaattgacagacttgtt
gctttatataaaaaagcagtgtataaaacagggggtttcttgacagatagcggtgatgtt
aatttagatcgcgtacaattaataatgtcagatctcggtgatgtagaagatgaaatcttt
aaaaagaggcaacaaaatgaattggcttttaaacaacgcgagaaagataaaaagaaaaga
aatgaaattgttagtaattttaaaccaatgtggattcctgcaggccaatttgcacccact
gttcctggaaaaaaagtaaaacccatagagaatgctcgttatgaagctttcaaaatgcgt
gtactaggtagaaactataatacgaatgctgctgaaaaaacgaacgctaatcaagcctta
gaaagcatgctaacacccgaggataaggggaacacaagtaaaggacagaaacgtaaaatc
gatgaagtttcagcgactgatgattcagacgatgatcaggcgcacgatgaagtgcggctt
tgggaagatggttttaaagatcgatattatgaatctaaattcgacgtatctcctgataat
cttgcatttagaaataatgtcgcgttgcaatacgttcgaggcttatgttgggttttacga
tattattatcaaggttgtgcatcatggcgatggtattttccatatcattatgcaccattt
gcaagcgattttattaatatcggtggtctttctacagagtttgaaaaggacactgaacca
tttcgtccattagaacaattgatgggtgtttttcctgctgctagcagaaagcatgtacca
gagccgtgggcgaaattaatgacagatccaaaatcacaaatcattgacttttatccggaa
gattttaaaattgatttgaatggaaagaagtttgcttggcaaggtgtagctttgcttcca
tttgtcgacgagaaaagattatttaaagctttggcatcttattacgactgtttaacagaa
gcagaaaaaaaaagaaacgttcgcggcaacgatagattgtacgtcggaatagagaatgag
ggttatgacttcataaaaggtctatatacgaatcgcgtagagtccgacaaggaagtagaa
ataagtatcgaaggaatgcgaggcactgtgctcttgtcagatgattgtataagcgacgga
ggtacgctaccgtcaccggtgagaggtctgccggttaggaacaacaaagtatactgtatc
aagttcaaggatccaatgtacggcagcaatcatattttccttgctcgcaagctaaaggga
gccaaagagcctccgcgtgtcttgaaaccacaagactttgaagcaatgaatcgcaaaaac
ggaagtcaatgggtaccgcaaactggttttactcgatctacgcagtcggcttctctagga
caagcaggacacagaatgctcgatcatcatatgaaccacaatagcagatcaggatcattt
gcaaacgttcctccacctgtcaatttataccagccgtatcatggttatcggagcgattat
caatcggggtacggttacagcagcgctgggtctagccaaatgcgtgggccgtggggatct
ggttatggtatgcgccaatcgaattatccatcctcggagtatcaacattatcgtaatcaa
tacgataatcgccagcaatctcaacggagcggtgccaattaccagagtgcacagcatggc
taccatagtccacggaattactcctcgtctcgaggaggaggtagtggaggaggtggtggt
ggaggtggaggtgggggtggaggaggccaccgagatggatggcgacggacgatgtaa
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