Cardiocondyla obscurior: 139111425
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Entry
139111425 CDS
T10704
Symbol
Hbs1
Name
(RefSeq) protein HBS1
KO
K14416
elongation factor 1 alpha-like protein
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139111425 (Hbs1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139111425 (Hbs1)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139111425 (Hbs1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
Phytoreo_S7
AAA_22
Dynamin_N
Motif
Other DBs
NCBI-GeneID:
139111425
NCBI-ProteinID:
XP_070527791
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All DBs
Position
LG24:2192356..2197397
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AA seq
694 aa
AA seq
DB search
MSRHRDVRSMNYSDEYDGYDDVYGHSVEDDYCVSPTVEQFLFDRSKQQNIASFITEPDIV
EDNEDVDESLPSSNEEKHNLSELERAKLESCLETIRNVIGDTVSDSKLKDKIILSNFDAN
TALDAILKESSPKQDADSAVNKKRLEQHPGNKLSVKPTLQVTTSSTVKVVPTGTKPVVKG
FDLSGIENTDLLSPRTGSPSSNRNSPETKRKEDIVQKERKAISSKTNSPRCQSPESGHVT
PELDSKVKSTASYDEKVDAEAIYKSKRGDSKEQLHLVVVGHVDAGKSTMLGRLLCDLGQV
PQRLIHKYQQESKKIGKQSFAYAWVLDETGEERERGITMDIGHSKFETDTKSITLLDAPG
HKDFIPNMISGATEADVALLVVDATRGEFETGFDSGGQTREHALLLRSLGISQLAVVVNK
LDTVNWSKDRFNEIVDKMSVFLKQAGFKDTVTFVPCSGLSGENIVTKSKEQLSNWYTGPT
LVNVIDNFKCPERPINKPFRFSVNDIFKGTGSGFCVSGHVETGMTSLGDKVLILPRNEIA
VIKGLQSDEVSITNAFAGDHVALTLAGIEQQNVGIGDIICNPQNPVSVTTCFQAHVVIFA
IAKPITKGLPVVMHQQSLVQPAVITKLIAQLHRSTGDVIKKKPRCLSKNSSAIIEVTTQT
PVCMELYKDIKQLGRVMLRLEGTTIAAGLITKIL
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcatcgagacgtccgttctatgaattactcggatgagtatgatggctatgat
gacgtttatgggcattctgtggaagatgattactgtgtatcacctactgtggagcagttc
ttatttgatcgaagtaagcagcagaatatcgcttcatttatcacagaaccagatatagtt
gaagataatgaagatgttgatgagtctttaccttcatccaatgaagaaaaacacaacctt
tctgaattggaaagggcaaagttagagtcttgtttggaaacaattagaaatgttataggc
gatacagtatctgactcaaaattgaaagataagattattctgtcaaattttgatgcaaac
acagcacttgatgccattttaaaagaatcgtcaccgaaacaagacgctgattctgcggtg
aataagaaacgattggaacagcatccaggtaacaaattatcagtgaaacccacgttgcaa
gttacaacatcgtctactgtaaaggtggtaccgactggaacgaagcctgttgtaaagggt
ttcgatttaagtggtatagaaaacacagatttattgagcccacgtaccggaagcccatct
tccaatcgaaatagtcccgagaccaagcgtaaagaagacatcgtgcaaaaggaaagaaaa
gcaatttcgtcgaaaactaacagtccaagatgccagtcacccgaatcaggccacgttacg
ccggaattagactccaaagtaaaatctactgcatcttacgacgagaaagtcgacgccgaa
gcgatatacaaaagtaaaagaggcgacagcaaagagcagcttcatttggtggtcgtagga
cacgtcgatgccggaaaaagtacgatgcttgggcgattactgtgcgatttgggtcaagtg
ccgcaaagattaatccacaaatatcaacaagaaagtaagaagataggaaagcaatcgttt
gcgtatgcttgggtactcgacgagactggcgaagaaagagagcgaggaataacaatggac
ataggccactcgaagttcgaaacagatacaaagtctatcactctcctagatgcacctggc
cacaaggattttattccgaatatgataagcggtgctacagaagcggacgtagctttattg
gtagtcgatgcaaccagaggcgaatttgaaactggattcgatagtggaggacaaacacgc
gaacacgctttgttattacgttcgttaggaatatcgcaattagcagtggttgttaataag
ctggataccgtaaattggtctaaagacagattcaatgaaatagtggacaaaatgagtgtg
tttctgaaacaagctggcttcaaggataccgttactttcgtaccttgcagcggtttatcc
ggagagaatattgtaacaaaatcaaaggagcagctctctaattggtataccggacctact
ctagtcaacgttatcgataattttaaatgcccagaacgtcctataaataaaccatttcgt
ttttcggtaaatgatatatttaaaggcacgggatctggattttgtgtatctggtcatgtt
gaaacgggcatgacatccttgggtgataaggttttaatactacctcgaaatgagatcgca
gttatcaaaggtcttcagtcagatgaagtttcgataacaaacgcgttcgccggtgatcac
gttgcgctgacattagcggggatcgaacaacaaaatgtgggtatcggtgatataatctgt
aatccgcaaaatccggtatccgtaacgacgtgctttcaagcgcatgtcgttatattcgcg
atagcgaaaccgatcacgaaagggcttccagtggtgatgcaccagcaatctttagtgcaa
ccagccgttatcacgaaattaatagcgcaacttcatcgaagtaccggcgatgtaattaag
aaaaaaccacgttgcttgtcgaaaaattctagcgcgataatcgaggtaacaacacaaaca
ccagtctgcatggaattgtataaggatattaaacagttaggtagagttatgttgcgatta
gaaggtacaaccattgcagctggtttgattacaaagatcttgtaa
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