Cardiocondyla obscurior: 139112022
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Entry
139112022 CDS
T10704
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139112022 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cobs03041
]
139112022 (Sf3b1)
03036 Chromosome and associated proteins [BR:
cobs03036
]
139112022 (Sf3b1)
Spliceosome [BR:
cobs03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139112022 (Sf3b1)
Complex B
139112022 (Sf3b1)
Complex C
U2 SnRNP specific factors
139112022 (Sf3b1)
Chromosome and associated proteins [BR:
cobs03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
139112022 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
HEAT_2
Htt_N-HEAT_1
XMAP215_CLASP_TOG
UME
CEP104-like_TOG
DUF2298
Motif
Other DBs
NCBI-GeneID:
139112022
NCBI-ProteinID:
XP_070528869
LinkDB
All DBs
Position
LG26:169795..176376
Genome browser
AA seq
1303 aa
AA seq
DB search
MDSIPRTHKDIEAQIREIQSKKKELLNAASEKEQVALGKTGFYDQDIYDSSNNKFDGYVT
SIATNDEIEDYDPFADKRLPTIIDREEKDYDPFADRRRPTIADREDEYRQKRRRMIISPE
RVDPFAEGGKTPDIGSRTYTEIMREQMLKGEETELRKRLAEKAKDGTLKANGEPKPAPKK
RGRWDQTDDTPVQKKISGASATPTSWDNADVTPAAIRWDETPGHGKGAETPGATPGVSTR
MWDATPAHATPGAVTPSRDTPSHEKAVTSRRNRWDETPKTERETPGHNSGWAETPRTDRV
AGDLIQETPTPSASKRRSRWDETPSNQTPGSMTPQTPATPLATPHQTTILTPSAVTPTGP
KAMGLATPTPGHLMSMTPEQLQAYRWEREIDERNRPLSDDELDALFPPGYKILQPPAGYI
PIRTPARKLTATPTPIAGTPQGFFIQTEDKSAKYVDNQPKGNLPFMKPEDAQYFDKLLVD
VDEETLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS
PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA
KAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAVCRSKKSWQAR
HTGIKIVQQIAILMGCAILPHLKSLVEIIEHGLVDEQQKVRTITALAIAALAEAATPYGI
ESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPD
EEMKKIVLKVVKQCCATDGVEAQYIKDEILPHFFKHFWNHRMALDRRNYRQLVDTTVEIA
NKVGASEIINRVVDDLKDENEQYRKMVMETIEKIMGNLGAADVDSRLEEQLIDGILYAFQ
EQTTEDVVMLNGFGTIVNTLGKRVKAYLPQICGTILWRLNNKSAKVRQQAADLISRIAVV
MKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLT
PILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTF
GYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPEL
NVQNGVLKSLSFLFEYIGEMGKDYIYAVSPLLEDALMDRDLVHRQTACAAIKHMALGVYG
FGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQYTLQGLFHPARKV
RDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggactcgatcccgagaacgcacaaagacatagaagcacagataagggagatacagtca
aagaagaaggagcttctgaatgcagcatctgaaaaagagcaggttgctctgggaaagact
ggtttttacgatcaggacatttatgacagtagtaataacaaatttgatggctatgttaca
tcaattgcaacaaatgatgaaattgaggattatgatccatttgcggacaaacgattaccc
accataattgacagagaggagaaggattatgatccatttgctgacagacgacgacctact
atagccgacagagaagatgaatatagacagaaaagacgtagaatgattatttctcctgag
cgtgttgacccttttgcagaaggtggaaaaacacctgatattggctccagaacatacaca
gagattatgcgggaacaaatgcttaaaggtgaagaaacagagttgagaaaaagattagca
gaaaaggcaaaagacggtactttgaaagccaatggtgaaccaaaaccagctcctaaaaaa
agaggccgttgggatcaaacggatgatactccagtgcagaaaaaaatatctggtgcttcg
gcaacacctacatcttgggataatgcagatgtgacaccagctgctattagatgggatgaa
actccaggtcatggtaaaggagcagagactcctggggctactcctggagtcagtacacga
atgtgggatgccacaccagcgcatgcaacgcctggagctgtgactccgagtagagataca
ccttctcatgaaaaagctgtaacaagtcgcagaaatcgttgggatgaaactccgaaaact
gaaagagaaacacctggacataacagcggttgggcagagactccgagaactgatcgagtt
gctggagatttaatacaggaaactccgactccttcggcgagcaaaagacgaagtcggtgg
gatgaaactccatcaaatcaaacgcctggctcgatgacgccgcaaaccccggcgacacct
cttgcaacaccccatcagacaacaattttaacaccaagtgccgtcacgccgacgggaccc
aaagcgatgggtttggctacaccgactccaggacatttaatgtccatgacgcctgaacaa
ttacaggcatatcgttgggaacgcgagatagacgaacgcaacagacctttgtcagacgat
gagttagatgcgctatttcctcctggatacaaaattttgcaacctccagcaggatacata
cccattcgcacgcccgctaggaagctcactgcaacgcctacgcctattgctggtacacct
caaggtttcttcattcaaacagaagacaaaagcgctaagtacgtggataatcaaccaaaa
ggaaatttaccatttatgaagccagaagacgcgcagtatttcgacaaattgttggttgac
gtagacgaagaaacactaagtcctgaggaacagaaagaaagaaaaatcatgaaactgctc
ttaaaaataaaaaatggaactcctccaatgcgtaaagctgctttgagacaaattacggat
aaagcaagagaatttggtgccggaccgttgttcaaccaaattcttccccttctcatgtca
cctactcttgaagatcaagaacgtcatttactggtcaaagtcattgatcgtattttatat
aaactggatgatttggtgcgaccatatgttcacaagattttagtcgtcatcgaacctcta
ttaatcgacgaagactactatgcacgtgttgaaggcagagaaattatttctaatttggca
aaagctgcaggattagctacaatgatttccacaatgagaccggatattgataatattgat
gaatacgttcgtaatacgacagcaagagcatttgcggttgttgcttcagctctcggaatt
ccttcacttcttcctttcttaaaagctgtttgtcgcagcaagaaatcttggcaagcgcga
catactggtattaaaattgtacaacaaatagctattttaatgggctgcgccattttaccg
catttgaagagcttggtagaaattattgaacatggtcttgtggatgagcaacagaaagta
cgaacaattactgctttagctattgctgcattagctgaggcagcaacgccatatggtatc
gaaagtttcgactctgtgctaaaaccactgtggaaaggtattcgtacacatagaggaaaa
ggtttagcagctttcctaaaagctattggttatcttattcctttgatggacgcagaatat
gcaaattactatactagggaagtaatgctaatccttatacgtgaattccagtctcccgat
gaagaaatgaaaaaaattgtattgaaggtagttaaacaatgttgtgcgacggatggtgtg
gaagctcaatacataaaagatgaaattttaccgcacttctttaaacatttctggaatcat
cgtatggcactagatcgcagaaattatcgacagcttgtggatacgacagtagaaatagct
aacaaagtgggcgcatcagagattattaatagagtagtagacgatttaaaggacgaaaat
gaacagtatagaaaaatggtgatggaaacgattgagaaaataatgggcaatttaggagca
gcagatgtcgattcacgtttagaagaacagcttatcgatggaatcttatatgctttccag
gaacaaactactgaggatgtcgtaatgttaaatggttttggaacgattgtgaacacattg
ggtaaaagagtgaaggcatatcttcctcaaatatgcggtacaatattgtggagattgaat
aataaatctgcaaaggtcagacaacaagcagcagatcttatttcacgtattgcagtcgtt
atgaaaacgtgtcaagaagaaaaattaatgggacatttaggagtcgttttgtacgagtat
ttaggcgaagaatatccagaagtattaggtagcattttaggagcattgaaagccattgtt
aacgttataggaatgacaaaaatgacaccacctattaaggatttgttaccaagacttaca
cccatcttgaaaaacagacacgaaaaggtacaagaaaattgtattgatctcgtaggcaga
attgcagatcgaggtcccgaatatgtttccgctcgagaatggatgagaatatgctttgaa
ttattggaactactgaaagcacataaaaaagctattagaagagcaacagtaaatactttt
ggttacattgccaaagctattgggccacacgatgtcttagccacacttttaaacaatttg
aaagtacaagaacgtcagaatcgtgtttgtaccacagttgctattgccatcgttgctgaa
acttgtagccctttcacagtgttacctgcgttgatgaacgagtatagagtgcccgaatta
aatgtacagaacggagtattaaaatccttatcgttcttgttcgagtatattggcgagatg
ggcaaagattatatttacgctgtcagtccgttactagaagatgcacttatggatagagat
ctagtacacagacagaccgcctgtgccgcaattaagcacatggcattaggtgtttatgga
tttggatgtgaagatgcattaatacatttattaaatcatgtatggccaaacgttttcgaa
acttcaccacatttagtgcaagcgtttatggacgctgtagatggattacgcgttgcactt
gggccaatcaagattttacagtatacactacagggtttgttccatccagctcgtaaagtt
cgcgacgtttattggaaaatatataattctctttacatcggtggacaagatgctctcgta
gctggttaccctcgtatcatgaacgatccaaagaaccaatatattagatacgaattggat
tatgtattgtaa
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integrated database retrieval system
