Cardiocondyla obscurior: 139112177
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Entry
139112177 CDS
T10704
Name
(RefSeq) periodic tryptophan protein 1 homolog isoform X1
KO
K14791
periodic tryptophan protein 1
Organism
cobs Cardiocondyla obscurior
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cobs03009
]
139112177
Ribosome biogenesis [BR:
cobs03009
]
Eukaryotic type
90S particles
Other 90S particles
139112177
Pre-60S particles
Other pre-60S particles
139112177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_RFWD3
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_DCAF4
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_EML
WD40_Gbeta
Beta-prop_ACSF4
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
PEP5_VPS11_N
NBCH_WD40
B-prop_COPA_B_2nd
BBS2_Mid
Beta-prop_SPT8
Beta-prop_WDR19_2nd
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
139112177
NCBI-ProteinID:
XP_070529128
LinkDB
All DBs
Position
LG27:569853..573373
Genome browser
AA seq
471 aa
AA seq
DB search
MEANVIACATWVKKGVAAAVPEKVELKPEELEIIIKETQAALETNEGEDDDSDKEIDISK
TQSGADNKEEESLTANIDEYNFKTYDDESGDICCHISNLISFRNGKDPLITNNEEDSDKE
DDIIKADDNLVLFGHVEGDASILEVFVYNEREESFYCHHDILLPSFPLCIEWLNYDPTNP
KPSNLCAIGNMTPIIEIWDLDLLDCLKPVYKLGRKLSKKKNRDRIGHKDAVLDVAWNHNY
THVLASGSVDRTVLLWDLENGTPVNKLGPFGEKVQALKWHSQETHQLLIGCADKNVRLFD
CMNKELVASWNTSGEVERVLWNHHDQNYCIASTDNGYIEYFDVRNSKPLWQIKGHENEVT
GLSLSTSCPGLLVSCSNDSVIKVWDIDQKDPTLIWEKMSNLGAIQCLAANPDNGFVFIVG
GDNKEHNFKVLDVMEIDPVRERFGKRVVSKNSLESQEEIMDATEDMESMDI
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaaacgttatagcttgtgctacgtgggtgaaaaaaggcgttgctgcagccgtt
ccagagaaagttgaattaaaacccgaagaactcgagataattataaaggagacacaagct
gctttagaaacaaatgaaggcgaagatgatgattccgataaagaaattgacatctctaaa
acacaatctggggcagacaataaagaagaagaatctttgactgctaatattgacgaatac
aactttaagacatatgatgatgaatctggtgatatatgttgtcacatcagtaatttaatt
tcttttcgaaatggaaaggatcctcttataacaaataatgaagaagattcggataaagaa
gatgatattatcaaggctgatgataatttggtattatttggtcatgttgaaggtgatgct
agcattttggaagtatttgtatataacgaaagagaagaatcattttattgccatcatgat
atattgcttccttcatttccattatgcatagagtggcttaattatgatcccactaatcca
aaaccaagcaatttatgtgctatcggtaatatgactcctataattgaaatatgggacttg
gatttattagactgcttaaaaccagtatacaaattaggccgaaaattaagtaaaaagaaa
aacagagaccgcatcggtcacaaagacgcagttttagacgtggcatggaatcacaattat
acacatgttcttgctagcggttcggttgaccggacagttttactatgggacttggaaaat
ggaacacctgtaaataaactaggtccgttcggcgagaaagtacaagcgttaaaatggcat
tcgcaagaaactcatcaactattaataggatgtgcagacaaaaacgtaagattattcgat
tgcatgaacaaggaacttgttgcgagttggaatacatcgggagaagtggaacgagtgtta
tggaatcatcacgatcaaaattattgtattgctagcacagataatggttacatagaatat
tttgatgtaagaaattccaaaccattatggcaaattaagggtcatgaaaatgaagttaca
ggtctttcgcttagtacatcgtgtcccggtctgttagtctcttgttcaaacgacagtgta
ataaaagtatgggacatagatcaaaaagatcctactcttatatgggaaaaaatgagtaat
ttaggtgctatacaatgtctcgctgcaaatccggataatggatttgtatttattgttggc
ggagataataaagaacataatttcaaagtcctagatgtcatggagatagatccagtgcga
gagagatttggaaaacgtgttgtatcgaaaaattcattggaatctcaagaagaaataatg
gatgctactgaagatatggaaagtatggatatttaa
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