Cardiocondyla obscurior: 139113557
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Entry
139113557 CDS
T10704
Symbol
L(3)72ab
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139113557 (L(3)72ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cobs03041
]
139113557 (L(3)72ab)
Enzymes [BR:
cobs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139113557 (L(3)72ab)
Spliceosome [BR:
cobs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139113557 (L(3)72ab)
Complex C
U5 SnRNP specific factors
139113557 (L(3)72ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
AAA_16
HTH_61
AAA_25
PhoH
nSTAND3
DEXQc_Suv3
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
139113557
NCBI-ProteinID:
XP_070530894
LinkDB
All DBs
Position
LG02:complement(7545120..7553168)
Genome browser
AA seq
2133 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTR
PGKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIVYRPKTQETRQTYEVLLSFI
QEALGDQPRDILCGAADEVLAVLKNDRLKEKEKKKETELLLGVLAEERFALLVNLGKKIT
DFGNDEKNTTNDENIDETYGINVQFEESSEEDDEDVYGEVRENDDEGDEGEEANDDRAIH
AENLGGTEEMKKEKPLHPLDIDAYWLQRRLSRIYNDAMVSQARAAEVLAVLKDAADDREC
ENQLVLLLGYDCFDFIKQLKKYRHTVAYCTMLASSQSESERQKIRNKMNDEPVLAKILRQ
LDTGKGEDDADETMEARSQRKRREENEDTGGPGGQIQGTRNLIDLEDLIFAQGSHFMANK
RCQLPDGSFRKQRKGYEEVHVPALKPKPFAENEKLHPIEQLPKYVQPAFEGFKTLNRIQS
RLYQAALESDENLLLCAPTGAGKTNVALLCMMREIGKHINADGTINADEFKVIYVAPMRS
LVQEMVGNFRKRLSTYNLTVSELTGDHQLTREQIVATQVIVCTPEKWDIITRKGGEKTFT
SLVRLIIIDEIHLLHDERGPVLEALVARTIRNIESTQEDVRLVGLSATLPNYQDVAAFLR
IKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLIFVH
SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIHH
AGMTRVDRTLVEDLFVDRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGA
LDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKMSDMLNAEVV
LGTIQNIRDAGTWLGYTYLYIRMLRCPNLYGISHDKLKQDPLLERHRADLIHSAAIGLDR
SGLIKYDRKSGNFQATELGRIASHYYCTHETMSTYNQLLKRTLSEIELFRVFSLSGEFKN
INVREEEKLELQKLMERVPIPVKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVFVTQ
SASRLMRAIFEIVLFRGWAQLADKCLSICKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKK
NFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLDLSTHIQPITRSTLRVVLTIAP
DFQWDEKVHGMSEAFWILVEDVDSEVILHHEYFLLKAKYAADEHIIKFFVPIFEPLPPQY
FLRVVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQALPITALRNTKFESIYSDFPQ
FNPIQTQVFNAIYNSDDNVFVGAPTGSGKTTIAEFAVLRLLTQNPEGRCVYMVSKEALAE
LVYADWAAKFGQQLGRKVVTLSGETGTDLKLLAKGQIIITTADKWDVLSRRWKQRKNVQN
IQLFIVDELQLIGGEEGPVLEVACSRARYISSQLDKPTRIIALSASLADAKDAAQWLGAP
AAATFNFHPSVRPVPLELHVQGINVTHNASRLAAMAKPVYNAILRHAAHKPVIVFVPTRR
QARLTAIDLLTFTAAEGQPSRFFNAEEADIKPFLDRMTDKTLKETLSQGVAYLHEGLSTD
DRRLVEQLFDSGAIQVAVATRDLCWGLSINSHLVVVMDTQCYNGKTHAYEDYPITDVLQM
VARANRPLEDEDAKCVLLCQSSKKDFFKKFLNEPLPVESHLDRRLHDHFNAEIVTKTIEN
KQDAVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVESTLTDLEQAKCVAVEDE
MDTLPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIISAAAEYESVPVRQREENL
LRSLAARLPHAPQAVRMADPHVKAQLLLQAHLSRIQLGPELQKDTELVLGKAVRLIQACV
DVLSSSGWLAPAVAAMELAQMVTQAMWSKDSYLKQLPHFTMETIKRCTDKGVETVFDVME
LEDDDRNRLLQLTDAQMADVAKFCNRYPNIEMSYEVQDKDKLHSGGTVNVIVQLEREDEV
IGPVVAPFFPQKREEGWWVVIGDPKSNSLLSIKRLTLQQKAKIKLDFVAPAPGQHSYTLY
FMSDAYLGCDQEYKFTINVGEYESDASSASDSD
NT seq
6402 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgctgctgcgcgtcagctacaatacgaatataaagcgaactccaatcttgtt
ttacaagctgacgtccggttaatagaaagacgcagtcgagatgaagctaccggcgaagtt
atgtcccttgtgggaaagctggatggtacacgtatgggcgaccgggcgcaacgtaccaga
cctggcaaggcagaggagagaaaagtcaaacgacaaaaacgtgacgaagctcaatatgat
tttacacgaatgaaaggagcaactctactgtctgagggtgtagatgaaatggttggtatt
gtatatcgtccaaaaacacaagaaactcgtcagacttatgaagtattgctcagtttcata
caagaagctttgggtgatcaaccgcgcgatatcctttgtggtgcagctgatgaagtattg
gctgtgttaaaaaatgatcgacttaaagaaaaagaaaagaagaaagaaactgaactttta
cttggtgtactagcagaggaaagatttgctttgcttgtaaatcttggaaaaaaaatcact
gattttggcaatgatgaaaaaaatacaacaaatgatgaaaatattgacgaaacatacggg
attaatgtacagtttgaggaaagtagcgaggaagacgatgaagacgtttacggagaggtt
cgagaaaatgatgatgaaggggatgaaggtgaagaggctaacgacgatagagctattcat
gcagaaaatttaggtggaacagaagaaatgaaaaaagaaaaaccattacatccattagat
atagacgcgtattggttgcaaagaagattaagtagaatatataatgatgcaatggtatca
caagcgagagctgccgaagtattagcagttttgaaagatgctgcagacgatcgtgaatgc
gaaaatcagcttgtacttttattaggctatgactgttttgactttattaaacaacttaaa
aagtacagacacacagttgcatattgtacaatgttagcctcatctcagtctgaatcagaa
agacaaaaaatccgtaacaagatgaacgatgagcccgttctcgcgaaaatcttacggcaa
ttagatacgggtaaaggtgaagatgacgccgatgagacaatggaagcgagatcgcaacgc
aaaagacgcgaagagaatgaagacacgggagggcctggaggacaaattcaaggaacaaga
aatttgatagatttggaagatttgatatttgctcagggaagccactttatggcaaataaa
cgttgtcagttaccagatggaagttttcgaaaacagcgaaaaggatatgaagaagttcat
gttcccgctttgaaaccaaaaccgttcgcggaaaatgagaaactgcatccgatcgaacaa
ttgcccaagtatgtgcaacctgcttttgaaggattcaagacgctaaatcgtatacaaagt
cgcttatatcaggcggcgctggagagtgacgaaaatctactgctgtgcgctccaacagga
gccggtaaaaccaacgtagctttattgtgcatgatgcgggagattggaaaacacataaat
gccgatggtacaatcaatgcagatgaatttaaagtaatttatgtcgccccgatgcgttcg
ttagtacaagaaatggtcggaaatttccgtaaacgattgtcaacatataatttaactgtg
tctgaattgacgggtgatcatcaattaacgcgagaacaaattgttgctactcaagtaata
gtttgcacaccggaaaaatgggatattataacgagaaagggtggcgaaaaaacgtttacg
tcgttagtacgattgattattattgacgagattcacttattgcacgatgagagaggtcct
gttttagaggcgttggtagcaagaacaatacgaaatattgaaagtactcaagaagatgtg
cgccttgttggtttgtcggccacgttaccgaattatcaagatgtcgcagcatttttgcgc
attaaaccggaaacaggattgttttatttcgacaacagtttcagacccgtcgctttagaa
cagcaatatatcggtgtcactgagaaaaaagcattgaaacgcttccaggtgatgaacgaa
attgtatacgagaaaaccatggaacacgccggtaggaatcaagtattgatatttgtacac
tcgcgtaaagaaactggaaaaacagcacgtgctattcgagacatgtgcctagaaaaggat
accttgggtcaatttcttagagaaggttctgcgtcgatggaggttttgagaacagaggcg
gagcaagtgaaaaatcaagagcttaaggatctgctgccatacggttttgctattcatcac
gccggtatgactcgcgtcgatcgtacattagtagaagatctttttgtcgataggcatata
caagttcttgtgtctacggcgactttagcctggggcgtcaatttgcctgctcatacagtt
attatcaaaggtactcaagtatataatccagaaaaaggcagatgggtcgagctgggcgcg
ttagacgtgctgcaaatgttaggacgagccggccgaccgcaatatgatacgaaaggagaa
ggtattcttatcacgaatcacagcgaattacaatattatttgtcactcttaaatcagcaa
ctacctatcgaatctcaattaatcagtaaaatgtccgacatgctgaacgcggaggtggtg
ctaggtacgattcaaaatatcagagacgcaggcacttggcttggctatacttacctttat
atcagaatgcttcgctgtccaaatctatatggaataagtcatgacaaattgaaacaagat
cctttactggagcggcacagagctgacttaattcactcggcagcaattggattagatcgc
agcggcttgataaagtacgatcgcaagtccggtaattttcaggcaaccgaattaggtaga
attgcatctcattattactgcactcatgaaacaatgtctacatataaccaattgttaaaa
cgcacgttgagcgagatagaattattccgagtgttctcattatcaggtgaatttaaaaat
ataaacgtaagagaggaagagaagctggagctccaaaaattaatggagagagtaccgata
ccagtaaaagaaagtattgaagaaccgagcgcgaaagtaaacgtattgttacaagcgtat
atttcacagctgaaactcgagggattcgctcttatgtccgatatggtgtttgtgacgcaa
tctgcttctcgccttatgagagctatctttgaaatagttttattccgtggctgggcacaa
ttggcggataaatgcttatccatttgcaagatgatcgatcgtagaatgtggcaatcgatg
tcaccgcttagacagtttcgcaaaatgccggaagaaattgtgaagaaaatcgagaagaaa
aatttcccgtgggagaggctttacgatcttgggccaaatgaaatcggcgagttaattcgc
gtgccaaagctaggaaaaactattcacaaatacgttcatcaatttccaaaattggattta
tcgactcatattcagccgatcacacgttctactttaagagttgtactaactatcgcacct
gattttcagtgggacgaaaaagttcacggtatgtcggaagcattttggatcttggtcgag
gatgtggattcggaagtgatattacatcacgaatactttttattgaaagctaaatacgca
gccgatgaacacataattaaattcttcgttccaatttttgagcccttgccaccacaatac
tttttacgggtggtgtccgatcgatggatcggcgcggagacgcaattgcccgttagtttt
cgacatttaatattgcctgagaagaatttaccacccacggaattgctagatttacaggcg
ctgccgatcacggcgttacgaaatactaaatttgagagtatttattccgattttccgcaa
tttaatccgattcagacgcaagtatttaacgcaatttataattccgacgataatgtattt
gttggagcaccgacgggttcagggaaaacaaccatagcggaatttgcggtgctaagatta
ctaacgcagaatccggaaggacggtgcgtatatatggtgagtaaagaagctctagctgaa
ctggtatacgccgactgggcggcaaaatttggccaacaactgggaaggaaagttgtcacg
ttgagcggtgaaacgggaacagatttaaagctactggctaaaggacagattattattacc
acagcggacaaatgggatgtattatcacgtagatggaaacaacgaaagaacgtgcaaaat
attcagctgtttatcgtcgatgaactgcaattgatcggcggtgaagaaggtcctgtgtta
gaagtcgcttgttctcgagcgcgttacatttcttcgcagctcgacaaacccactagaata
atagcgttatcagcctcgctagctgatgctaaggacgccgcacagtggttgggtgcaccg
gcagcggcaacttttaattttcatccttctgtgcgaccagtgccattagaattgcacgtg
caaggtataaacgttactcataacgcatcgcgattagctgccatggcaaaaccagtgtac
aatgcgattcttcggcatgctgcgcacaaacctgtgattgtattcgtacctacgcgtcgg
caggcgagattaacggccattgacttacttacatttacagcagctgaaggtcaaccgtcg
agatttttcaacgcagaagaggccgacattaaaccatttctcgatcgaatgactgataaa
acgttgaaagaaaccttgtcgcaaggcgtagcttaccttcacgaaggtttgtcgaccgac
gatcgccgtttagttgagcaactatttgacagtggagctatacaagtggcagttgctacc
agagatctctgctggggtttatcaattaattctcatctcgttgtggtcatggacacccag
tgttataacggcaagacgcacgcctacgaagattatccgatcacggacgtgttgcagatg
gtagcgcgagctaatcggcccttagaagacgaagacgccaagtgcgtacttttatgtcaa
agctcgaaaaaagatttttttaagaaatttttgaacgagccgttaccagttgagagccac
ttggatcgtcgattgcacgatcactttaacgcggaaattgtaacaaaaactattgaaaac
aaacaagatgctgtagattatctcacatggactttcttataccgacgacttactcagaat
cctaattactatggcctgcaaggcgtcacacacaggcatctctcggatcatctgtccgag
ctggttgagagcacgttaaccgatctggaacaagctaaatgtgtcgctgtagaagatgaa
atggatactcttccgctcaatctgggaatgatcgccgcctattactatattaattacgcc
accattgaattatttagtttatctctcaacaataaaacaaagattagaggtttgttagaa
attatttcagcggctgcagagtacgaaagcgttccagtacggcaaagagaagagaattta
ttgagaagtttggctgctcgtttacctcacgcgccgcaagccgttagaatggcagatcct
cacgtgaaagcacaacttcttttacaggctcatttgtcaagaatacagctaggcccggaa
ttacaaaaagacaccgaattagtcctgggcaaagctgtgagattgatacaagcttgcgtc
gacgtactgagttcttccggatggttggcacctgctgtcgctgctatggaactcgcgcaa
atggtaacgcaagcgatgtggtccaaagattcttatttgaagcaactaccgcatttcaca
atggaaactatcaaacgttgcaccgacaaaggcgtagaaactgtgttcgacgtgatggag
ctcgaggatgacgatcgaaatcggctgctacagttaacagacgcgcagatggcagacgtc
gcaaaattctgcaatagatatcccaacatcgaaatgtcatacgaagtacaagataaagat
aaattgcatagcggtggtacggtaaatgtgattgtacaattggaacgagaagacgaagta
atcgggccggtagttgctccattcttcccgcaaaaacgtgaagaaggctggtgggtagta
atcggtgatccaaagagcaattctttgctctctatcaagcgcttaacgttacaacaaaaa
gcaaagatcaaattggactttgttgctcctgcacctggtcagcactcgtatactttgtat
tttatgagcgacgcttatctaggttgcgatcaagaatacaagttcactattaacgttgga
gaatacgaatcggatgctagttcagcttctgattctgattaa
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integrated database retrieval system
