Cardiocondyla obscurior: 139113603
Help
Entry
139113603 CDS
T10704
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
cobs Cardiocondyla obscurior
Pathway
cobs04512
ECM-receptor interaction
cobs04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139113603
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139113603
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cobs00535
]
139113603
Proteoglycans [BR:
cobs00535
]
Extracellular matrix (ECM) proteoglycans
Others
139113603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139113603
NCBI-ProteinID:
XP_070530962
LinkDB
All DBs
Position
LG03:8722219..8732770
Genome browser
AA seq
635 aa
AA seq
DB search
MYLQVWMFVHIIAYAQYTVAKRGLCNGYKSGEDDLQTFDFISKLKLDLLGARYSSMTKVQ
GSNSMQTAYRLEKDTDVTLPTKNITSSGLSEEFSLVYTLRARKLRKYPWHVVKIVDAAGD
PQLLITMNSRKRTLDFSSIDYEGELQTVSFVNDRVFDKDWHKVNFGVFKDKVVLNVDCEF
IGVEDLRPRRPIKVDGNISIAKLSNSKSTLPIDLQWMVVNCDPTRHEREMCNELPKTVAA
PLQVKASCETICPQGPRGFNGTDGLPGPPGAPGPVGASGSPGLPGPRGPSGEKGKTGISG
NPGARGFPGLQGPKGPIGPVGPPGLPGLPGRKGERGDMGFPGLKGDQGPRGFPGPPGNTS
DFSYSFNSSLYKGERGAKGEPGENGIQGQPGEKGEPGDRGNPGTPGKEGAPGLQGFPGNR
GQTGLPGLQGLPGRSISEPEIRDICASVLREQMTEMAALMQGLPGPPGRGRPGRPGTPGP
QGRPERLKELTEGLRGLPGLPGPARHGRPGRAGKRGIPGDPGPPGLPGERGFVGLPGPQG
PVGPQGSPGERGEKGDRGPEGIGLEGPPGLIGPPGPPGNDGIGLPGRQGDRGEPGKPGIP
GVRGPPGAQGPPGYCEFCNYPGSYYLQNRGNEKGP
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtatctgcaagtatggatgtttgtgcatataatcgcttacgctcagtataccgtcgcc
aaacgtgggctgtgcaacggctacaagtctggcgaggacgatcttcaaacgttcgacttt
atcagcaagctgaaattggatctgctgggtgcgcgttatagtagcatgacgaaagtccag
ggcagcaatagcatgcaaacagcataccggctagagaaagacactgatgtcaccctcccg
acaaagaacattacatccagcggactttcggaggaattctctttggtgtataccctcaga
gctaggaaattgcgaaagtatccttggcacgtcgttaagatcgtagatgcagccggcgat
ccccaacttctcattacgatgaattccaggaagcggacgctggatttttcatcgatcgat
tacgagggagagttacagacggtctctttcgtgaatgatcgcgtatttgacaaggattgg
cacaaagtgaatttcggagtgttcaaggataaggtggtccttaacgtcgactgcgaattt
attggcgtagaagatctaaggccacgcagaccgattaaagtcgacgggaacatatcgata
gccaagctaagcaatagcaagagcaccttaccgattgacttgcaatggatggttgtaaac
tgcgatccaacgaggcatgagagagaaatgtgcaacgagctaccgaagaccgtagccgca
ccgcttcaagtaaaagctagctgtgagacgatttgtccccaaggaccacgtggttttaat
ggtacagatggattgcctggtccacctggagcaccgggaccagttggtgcctcgggctca
cctgggcttccaggtccacgtggtccgtcaggagaaaaaggaaaaacaggaatctcgggt
aatcctggtgccaggggttttccaggattgcaaggtcccaaaggaccaattggacctgtg
gggccaccaggtttgccgggattaccgggacgaaaaggagaaagaggtgatatgggattt
ccgggtctgaaaggagatcaaggtcctcgaggatttcctggtccgccagggaatacaagt
gacttttcttattcttttaattcttcattatataaaggcgagagaggtgctaaaggtgaa
ccgggagaaaatggtattcaaggacagccgggtgaaaaaggcgaacctggagatagagga
aatccaggaacacccgggaaagagggagcgccaggactgcaaggtttccccgggaacagg
ggtcaaacgggattacctggacttcaaggtctcccaggccgtagtataagtgagccagaa
attcgcgatatttgtgccagtgttctgagagaacagatgaccgaaatggcagcgctaatg
caaggcttgcctggcccgcctggtcgaggtcgtccgggccgtcctgggacacctggtccc
caaggtcgtccagagagactgaaagaactaacagaaggtctacgagggctacccggatta
ccgggaccggctcgacacggccgtcccggtcgagccggaaagcggggcattccaggtgat
ccgggaccaccaggtttgccaggagaacgtggattcgtcggtttgccaggcccgcagggt
cctgtcggtccgcaaggatcacctggcgaacgtggggaaaagggggatagaggacctgaa
ggaattggtttggaaggcccgcctggtctgataggtccaccaggacctcctggtaatgac
ggcatcggtttacctggaagacagggtgatagaggtgaaccaggcaaaccaggtattcct
ggcgtgagaggtccgccaggtgcacaaggaccacctggatactgcgaattttgcaattat
cccggcagttattacttacaaaatcgaggcaacgaaaaaggaccttga
DBGET
integrated database retrieval system
