Cardiocondyla obscurior: 139113848
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Entry
139113848 CDS
T10704
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03018
RNA degradation
Brite
Enzymes [BR:
cobs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139113848 (Mtr4)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
139113848 (Mtr4)
Spliceosome [BR:
cobs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139113848 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
139113848 (Mtr4)
Ribosome biogenesis [BR:
cobs03009
]
Eukaryotic type
Pre-60S particles
Helicases
139113848 (Mtr4)
Transfer RNA biogenesis [BR:
cobs03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
139113848 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139113848
NCBI-ProteinID:
XP_070531376
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All DBs
Position
LG03:55493..59512
Genome browser
AA seq
1010 aa
AA seq
DB search
MANFSEDLFDIFDEEGDNTEEIPDVAKKIELGTRIKRQFDTNNDELAVKKLRHESVLDDI
NLEDVACCIKVHTVETIESCTHEVAVPPDQLYVPLERHQGKPAKEYKFILDPFQKEAILC
IDNNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKYREFHEEFKDVG
LITGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEETL
ILLPDNVHYVFLSATIPNARQFAEWVAHLHNQPCHVVSTDYRPTPLQHYIFPVGGDGIHL
VVDETGQFKEENFNRAMACLQNMGDASKGDTKGRKGGMRPTNSGQTNIFKMVKMIMERNF
APVIIFSFSKKDCEVYAMQMAKLDLNTLDEKKLVDEVFNNAIDVLNEEDKKLPQVMNLLP
LLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDG
KDFRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPAVGKTIVQGKPDPINSAFHLT
YNMVLNLLRVEEINPEYMLERSFFQFQNQAGIPLLYNKVKELQESYNTVNVERYDEISSY
HDIRQQLNRLTGQFQSFLTRPEYLVPFLQPGRLIKVKNLLETFDWGIVVNFKKKPPKNPA
KNKTAIVIDVLLHLSKDSKEGNPIPCREGEEGEVEVVPVMHRLISQISSLRLYYPKDLRP
PDNRKSVLKSIREVKKRFPDGPPLLNPITDMKIEDQGFKVIVNKIEALEKKLYAHSLHKD
PNVNVLYEQFLHKEELATQLKQAKEEFKQAKSILQMDELKCRKRVLRRMAYCTSADVIEL
KGRVACELNGADELLMTEMIFNGLFNALSVPQMVALISCFVCDEKSNEMPKSTEELSGPL
RQMQDLARRIAKVSTEANLELNEDAYVDRFRPFLMDVIYAWCKGATFLQICKMTDIFEGS
IIRCMRRLEEVLRQLCQAAKGIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatttttctgaagatttgtttgacatttttgacgaagagggtgataacacggag
gagataccggacgttgcaaagaaaattgaactaggaacgagaatcaaacgacaatttgac
acgaataacgatgagttagccgtcaaaaaattaagacacgaatctgtcttggacgatatc
aatttggaagatgtagcatgctgtataaaagtacacactgtagaaaccatagaatcgtgt
acgcacgaagttgccgtgcctcccgatcaactgtacgtacctttggagcgtcaccaaggc
aagccagccaaagaatataaatttatactcgatccgtttcaaaaagaggcaattttatgc
attgataataatcaatcggttctcgtctctgcgcatacttcggctggcaaaaccgtcgtg
gctgaatatgcaatagcgtgttcactcagagataaacagagagtaatatatactactccg
ataaaagcgctgagcaatcagaaatatagagagtttcacgaggagtttaaagatgttgga
ttaataacgggtgacgttactattaatccaacggcgagtgttctaatcatgactactgaa
attttacgaaacatgctttataggggttcagaggtaatgcgcgaagttggctgggtgatt
tttgacgagattcactacatgcgcgataaagaacgaggtgtagtatgggaggagacactc
atattgttacccgacaacgtgcactatgtatttctctcggctactataccaaacgcacga
caatttgcagagtgggtggcacatttgcacaatcaaccttgccacgtcgtgtccacggac
tacagacctactccgttgcagcattatatttttccagttggcggcgacggtatacatttg
gttgtagatgagaccggtcaattcaaagaggaaaactttaatagagctatggcatgcctt
cagaacatgggtgacgcgtctaaaggtgataccaaagggcgcaaaggtggtatgcgtccc
acaaacagcgggcaaacaaatatcttcaagatggtaaaaatgattatggagagaaacttc
gcgcctgtaataattttcagcttttcgaaaaaagattgcgaggtatacgcgatgcaaatg
gctaaactggatttgaacacgctagacgagaagaaacttgtcgacgaggttttcaacaac
gcgatagatgttcttaatgaggaagataaaaagttacctcaagttatgaacttgctgcca
cttttgcgacgtggaatagggatccatcacggcggactcttgccgatcttgaaagaaacg
gtcgagatattattcggcgagggtctgatcaaagcgcttttcgccactgaaacgtttgcg
atgggcttgaacatgccggcgcgaacagttttattcacggcgccccgcaagtttgacggt
aaggatttccgttggatcacgtcgggggaatacatccagatgtccggccgcgctggcaga
agaggtctcgacgacaaaggaattgtcatattgatgatagacgaacaggtcagcccggcc
gttggtaagactattgtccagggaaaaccagatccaattaactccgcatttcacttgact
tataatatggttcttaatcttctccgagtggaagaaataaatccagaatacatgttggaa
agaagctttttccaatttcaaaatcaagctggcattccacttctgtacaacaaggtgaaa
gaattacaagaatcttacaataccgtaaacgtggaaagatacgacgagatttcttcgtat
catgatatacgccagcaactcaatcgtttgactggacagtttcaatcatttctaacgcga
ccagagtacttggttccatttttgcaacctggaagattaattaaagtaaaaaatctactc
gaaacattcgattggggaattgtggtaaattttaaaaagaaaccgcctaaaaatccagca
aaaaacaaaactgctatcgttattgacgttttacttcatctatcgaaagattctaaagaa
ggcaatccaattccatgtcgcgagggggaagagggcgaagtggaagtagtccctgttatg
catcgtttaatttcgcaaattagttcattgagattatactacccgaaagatcttaggccg
cctgacaatagaaaaagtgtgctgaaatcgatacgagaagtgaagaagagattcccagat
ggtccaccgttactcaatcctattacagatatgaagatagaagatcaaggttttaaagta
atcgtcaacaaaattgaagcgttagaaaaaaaattatacgctcattctttgcataaggac
cccaatgtaaatgtattatacgaacaatttttgcataaagaagaattagctacacagctc
aagcaagctaaagaggagttcaaacaggcaaaatcaatacttcaaatggacgagctaaaa
tgtagaaaacgagttttacggagaatggcttattgtacgtcggcggacgttatagaatta
aaaggacgtgtagcttgcgagctgaacggtgccgatgagctgttaatgaccgagatgatt
tttaatggtctttttaacgcgttgagcgtgccgcaaatggtggcattgatcagttgtttt
gtatgcgacgaaaagtcaaatgaaatgcctaaaagtacagaagaactaagtggaccgctc
aggcaaatgcaagatctcgctcgaagaatagcaaaggtatcgacagaggctaatttggaa
ttaaatgaagacgcatatgtcgacagattcagaccatttttaatggacgttatatacgct
tggtgtaaaggcgcaacgtttttacagatttgcaaaatgacagatatatttgaaggatct
ataatcaggtgtatgagacgtttagaggaagtgcttcgacaattatgccaagccgcaaag
ggtatcggaaatacagacctagaaaataaatttagcgaagcgattaaacttataaaacgg
gatattgtgtttgctgcaagtttatatttataa
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