Cobetia sp. UIB-001: HA399_15510
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Entry
HA399_15510 CDS
T11752
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cobu Cobetia sp. UIB-001
Pathway
cobu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HA399_15510 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobu03021
]
HA399_15510 (rho)
03019 Messenger RNA biogenesis [BR:
cobu03019
]
HA399_15510 (rho)
Transcription machinery [BR:
cobu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HA399_15510 (rho)
Messenger RNA biogenesis [BR:
cobu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HA399_15510 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
AAA_22
S1CSD-TOTE-2
Fungal_virus_P2_C
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
XKE43031
LinkDB
All DBs
Position
complement(3750460..3751719)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTQLKQNTVPELLELAQTMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDTISGKIRPPKEGERYFALLKVNQIN
FDRPENAKHKILFENLTPLFPQSRLLMEIGNGSTEDITSRILDLTAPIGKGQRGLIVSPP
KAGKTMMLQNIAASITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSVTRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTILATALVDTGSKMDEVIFEEFKGTGNMEAHLDRKLAERRVFPALNI
RRSGTRREDLIASEDEMQRMWILRKLLNPMEDVAATEFLIDRLKDTKTNLEFFEAMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttacccaactcaagcaaaatactgtccccgaactgctggaacttgcccagacg
atgggcatcgataatctggcacgttcgcgcaagcaggacatcatcttcgccatcctcaag
aagcacgcgaaaagcggtgaggacatctacggcgacggcgttctggaaatcctgcaggac
ggcttcggcttccttcgcagtgcagactcttcctacctcgcgggccctgatgacatctac
gtttcaccgtcccagatccgtcgcttcaatctgcgcaagggcgacaccatctccggcaag
attcgtccgccgaaggaaggggagcgttacttcgcgctgctcaaggtcaatcagatcaac
tttgaccgccccgagaatgccaagcacaagatcctgttcgagaacctgacgccgctgttc
ccgcagtcgcgcctgctgatggaaatcggcaacggttccaccgaagacatcacctcgcgc
atccttgatctgaccgcaccgatcggcaagggccagcgtggcctgatcgtctcgccgccc
aaggcgggcaagacgatgatgctgcagaacatcgccgcctccatcacgcgcaacaacccc
gaatgtcacctcatcgtgctgctgatcgatgagcgtcccgaggaagtcaccgagatgtcg
cgcaccgtgcgtggcgaagtcgtggcctccaccttcgatgagccgccggcccgtcacgtc
caggtcgccgagatggtgatcgagaaggccaagcgtctggtcgagcacaagaaggatgtc
gtcatcctgctcgattccgtgacccgtctggcgcgtgcctacaacaccgtggtgccgtct
tccggcaaggtgctgaccggtggtgtcgacgctcacgcgctcgagaagccgaagcgcttc
ttcggtgccgcgcgtaacatcgaagaaggcggcagcctgaccatcctcgccacggcgctg
gtcgataccggttccaagatggacgaggtcatcttcgaggaattcaagggcaccggtaac
atggaagctcacctcgaccgcaagctggccgagcgtcgtgtcttcccggccctcaacatc
cgtcgctccggcacgcgtcgtgaagacctgatcgcgtccgaggatgaaatgcagcgcatg
tggatcctgcgcaagctgctcaacccgatggaagatgtggcggccaccgagttcctgatc
gatcgtctgaaagataccaagaccaacctcgagttcttcgaggccatgaagcgccgctga
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