Cobetia sp. UIB-001: HA399_16640
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Entry
HA399_16640 CDS
T11752
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cobu Cobetia sp. UIB-001
Pathway
cobu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cobu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HA399_16640 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobu03021
]
HA399_16640 (rpoC)
03400 DNA repair and recombination proteins [BR:
cobu03400
]
HA399_16640 (rpoC)
Enzymes [BR:
cobu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HA399_16640 (rpoC)
Transcription machinery [BR:
cobu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HA399_16640 (rpoC)
DNA repair and recombination proteins [BR:
cobu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HA399_16640 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
BSH_YknX
Biotin_lipoyl
Apocytochr_F_C
BSH_RND
DUF7129
Motif
Other DBs
NCBI-ProteinID:
XKE43227
LinkDB
All DBs
Position
complement(3995471..3999712)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKDLVKVLKSQAQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMAHIELASPVAHIWFLKSL
PSRIGMLLDMTLRDIERVLYFESFVVIDPGMTTLEKGHLLNDEQYFEALEEFGDDFDARM
GAEAIKALLEDIELEEEVERLREEIPQTNSETKIKKLSKRLKLLEAFYYSGNKPGWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYAKLQASGHASTIKAAKKMVEREAPEVWDFLADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTREKIGAKGEGMAFANLGEVERAFGTH
SAHLHAMVKVRLTETLKDEESGELYEKTSLHDTTIGRALLFRILPKGMPFELINQVMKKK
AISGLINEAYRRVGLKDTVIFADQLMYTGFRLATWSGASIGVNDFVIPDAKKVIIDAAED
EVKEIEDQFSSGLVTAGEKYNKVIDIWARANDRVAKEMMAGISKETVVNWKGEVVNDEDG
KPMEQDSFNSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITEADCGTQEGLILHPVIEGGDI
IVPLSQRVLGRVVAQDVIDPVSDEVLIARGTLLDEAWCAQLDTMGVDEIIVRTTIGCETV
HGVCSACYGRDLARGHQVNVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQ
VKHGGSVRLHNIKSVERADGKLIVVSRSSALAVADDHGREREFYKLPYGAELSVRDGDPV
ASGQSVAKWDPHTHPIVAEVAGQVQFTDMEDGQTINRTTDEMTGLSSIEVIESASRPSAA
RDKRPMIMLVDGSGKHVTLPGSNTPVQYLLPGNAVVSAENGAAVGVGDVIARIPMEASGN
KDITGGLPRVADLFEARRPKEPAILAEISGTVTFGKETKGKRRLTITPVEGDPFELLIPK
WRQISVFEGETVEKGEVISDGPSNPHDILRLLGVAEMTKYITTEVQEVYRLQGVGINDKH
IEVIVRQMLRKVEITDSGDSTFITGDQVEYARVVEENMRLEADGKFPAKFDRILLGITKA
SLATESFISAASFQETTRVLTEASVTGKRDYLRGLKENVVVGRLIPAGTGLAYHDERRRR
RDGLPLAPAPSAQDVEQELGAQLTALDADDDDL
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagttctcaaatcgcaggcgcagtccgaagaattcgacgccatc
aagattaccctggcgtctccggacatgattcgctcgtggtcttttggtgaagtgaagaag
cctgaaaccatcaactaccggacattcaagccggaacgtgatggtcttttctgtgccaag
atctttggcccggtgaaggactacgagtgcctgtgtggcaagtacaagcggatgaagcat
cgcggcatcatctgtgagaagtgtggcgttgaagtgaccaaggcggcagtgcgtcgtgag
cgtatggctcacatcgaactggcgagcccggtcgcgcatatctggttcctgaagtccctg
ccgtcccgtatcggcatgctgctcgacatgactctgcgtgatatcgagcgcgtgctgtac
ttcgaaagcttcgtggtcatcgacccgggcatgacgaccctcgagaagggtcatctgctc
aacgatgagcagtacttcgaagcgctagaagaattcggtgatgatttcgacgcccgcatg
ggtgccgaagccatcaaggcgctgctcgaggacatcgagctggaagaagaggtcgagcgc
ctgcgtgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ctcaagctgctggaagccttctactattccggcaacaagccgggctggatgatcatggaa
gtgctgccagtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctcggatctgaacgatctgtatcgtcgtgtgatcaaccgcaacaaccgcctcaag
cgtctgctcgacctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatccgtggatgctctgctcgacaacggtcgtcgcggtcgcgccatcaccggttccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactattccggtcgttccgtcatcaccgtcggcccgacc
ctgcgtctgcaccagtgtggtctgccgaagaagatggcgcttgagctgttcaagccgttc
atctacgccaagctgcaggcctccggtcacgccagcaccatcaaggccgccaagaagatg
gtcgagcgcgaagccccggaagtctgggatttcctcgccgacgtcatccgcgagcacccg
gtgctgctgaaccgtgccccgactctgcaccgtctgggtatccaggcgttcgagccgctg
ctgatcgaaggcaaggccatccaactgcacccgctggtctgcgctgcgtacaacgccgac
tttgatggtgaccagatggctgtccacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacgtgctgtcgccggccaacggcgagccgatcatc
gtgccgtcccaggacgtcgtgctgggtctgtactacatgacccgcgagaagatcggtgcc
aagggtgagggcatggccttcgcgaacctgggtgaagtcgagcgtgccttcggtacgcac
agcgctcacctgcacgcgatggtcaaggtccgtctgaccgagacgctcaaggacgaagag
tccggcgagctgtacgagaagacgtccctgcacgacaccaccatcggtcgcgcactgctg
ttccgcattctgccgaagggcatgccgttcgagctgatcaaccaggtgatgaagaagaaa
gccatctccggtctgatcaacgaggcgtaccgtcgtgtcggtctgaaggacaccgtcatc
ttcgctgaccagctgatgtacaccggcttccgtctcgcgacctggtccggcgcctccatc
ggcgtcaacgacttcgtcatcccggacgcgaagaaggtcatcatcgacgcggccgaagac
gaagtgaaagagatcgaagaccagttctcctccggtctcgtgaccgcgggcgagaagtac
aacaaggtcatcgatatctgggcgcgtgccaacgaccgtgtcgccaaggagatgatggca
ggtatctcgaaagagaccgtcgtcaactggaaaggcgaagtggtcaatgacgaagacggc
aagccgatggagcaggactccttcaacagcgtcttcatcatggccgactccggtgcgcgt
ggttccgccgcacagattcgtcagctggctggtatgcgtggcctgatggccaagccggat
ggctcgatcatcgagacgccgatcaccgccaacttccgtgaaggtctgaacgtactccag
tacttcatctccacgcacggtgcccgtaagggtctggcggatacggcactgaagaccgcc
aactccggttacctgacccgtcgtctggtcgatgttgcccaggatctggtcatcaccgaa
gcggattgcggcactcaggaaggtctgattctgcacccggtcatcgaaggcggcgacatc
atcgtcccgctgtcccagcgcgtgctgggtcgtgtcgtggcgcaggacgtgatcgatccg
gtctctgatgaggtcctgatcgcacgcggcacgctgctcgacgaagcctggtgtgcacag
ctcgataccatgggcgtcgatgagatcatcgtgcgtaccaccatcggttgtgaaaccgtg
cacggtgtctgctcggcctgttacggtcgtgacctggcgcgtggccatcaggtcaacgtc
ggtgaagccatcggtgtcatcgcggcacagtccatcggtgagccgggtacccagctgacc
atgcgtaccttccacatcggtggtgccgcttcgcgtgcctccgccgtggacagtgtccag
gtcaagcatggcggcagcgtgcgtctgcacaacatcaagtcggtcgaacgtgccgatggc
aagctgattgtcgtctcgcgttccagcgcactggcagtggcggatgaccacggccgtgag
cgcgaattctacaagctcccgtacggtgctgagctgtccgtgcgtgacggcgatccggtg
gcctctggtcagtccgtcgccaagtgggatccgcacactcacccgatcgtcgcggaagtc
gcgggtcaggtgcagttcacggacatggaagatggccagaccatcaaccgtaccactgac
gaaatgaccggtctgtcctccatcgaggtcatcgaaagtgcttcacgtccgtccgcggcc
cgtgacaagcgtccgatgatcatgttggtagacggtagcggcaagcacgtgacactgccg
ggctccaacacgccggtccagtacctactgccgggcaatgccgtggtgtccgccgagaat
ggcgcggccgtcggcgtgggtgacgtcatcgcacgcatcccgatggaagcgtccggtaac
aaggacatcaccggtggtctgccgcgtgttgccgacctgttcgaagcacgtcgtccgaaa
gagccggccatcctggccgagatctccggcaccgtgaccttcggcaaggaaaccaaaggc
aagcgtcgtctgaccatcacgccggtggaaggtgatccgttcgagctgttgatcccgaaa
tggcgccagatcagcgtcttcgaaggtgaaacggtcgagaagggtgaagtcatctccgat
ggcccgagcaacccgcacgatatcctgcgtctgctcggcgtcgcggaaatgaccaagtac
atcaccaccgaagtccaggaggtctatcgcctccagggtgtcggcatcaacgacaagcac
atcgaagtcatcgtgcgtcagatgctgcgcaaggtcgagatcaccgattctggcgattcc
accttcatcacaggcgaccaggtggaatacgcccgcgtcgtcgaagaaaacatgcgtctc
gaggccgacggcaagttcccggccaagttcgatcgcatcctgctcggtatcaccaaggcg
agcctggcaactgaatcgttcatctccgcggcgtccttccaggaaaccacgcgagttctg
accgaggcatctgtcaccggcaagcgcgattatctccgtggtctgaaggagaatgtcgtg
gtcggtcgcctgattccggcgggtactggcctggcctatcacgacgagcgtcgccgccgt
cgcgatggcctgccgctcgcaccggccccgtcggcacaggacgtcgagcaggaattgggc
gctcagctcactgccctcgacgcggacgacgacgacctctga
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