Capnocytophaga ochracea: Coch_0008
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Entry
Coch_0008 CDS
T00961
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03030
DNA replication
coc03430
Mismatch repair
coc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Coch_0008
03430 Mismatch repair
Coch_0008
03440 Homologous recombination
Coch_0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
coc03032
]
Coch_0008
03400 DNA repair and recombination proteins [BR:
coc03400
]
Coch_0008
Enzymes [BR:
coc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Coch_0008
DNA replication proteins [BR:
coc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Coch_0008
DNA repair and recombination proteins [BR:
coc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Coch_0008
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
ExoX-like_C
RNase_H_2
DNA_pol_B_exo1
Motif
Other DBs
NCBI-ProteinID:
ACU91574
UniProt:
C7M442
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All DBs
Position
complement(9313..10089)
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AA seq
258 aa
AA seq
DB search
MELKLSKPICFFDLETTGIDITKDRIVEISILKVYPNGNKESKTWLVNPTIPIPKAASDV
HGITDERVAGEPTFKELAKQIHNMIKDSDLAGYNSDRFDIPLLAEEMLRAEVDFDLGNRV
SVDVQTIFHKMEQRTLSAAYKFYCGKDLIDAHTASADTNATYEILKAQLDRYDNLENNIK
KLSEFTYRKQIADFAGFIGYNDKGEEIFTFGKHKGKRVEDIFDEEPGYFGWLLGADFPLY
TKKILTAIKLRKLSATIK
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
gtggaactaaaattatcaaaacctatttgtttttttgaccttgaaactacgggcatcgat
attaccaaagaccgaattgttgaaatatctatcttgaaagtctaccccaatggcaataag
gaaagcaaaacgtggttggtaaaccctactattcctatccccaaagctgcctcagatgtg
cacggcattaccgatgagcgcgttgcgggtgagcctacttttaaagagcttgccaagcaa
attcataatatgataaaagattccgaccttgctggctacaattccgaccgctttgatatt
cctttacttgccgaagaaatgttgcgtgccgaagtagattttgatttgggaaaccgcgta
tcggtagatgtacaaactatttttcacaaaatggaacagcgcaccctctcagcagcctat
aaattctattgtggtaaagaccttattgatgcgcatacggcttcggcagataccaatgcc
acttatgaaatcctcaaagcccagctcgaccgttatgacaacttagagaacaacatcaaa
aagctcagcgagtttacttatcgcaaacaaatagccgactttgctgggtttattggctat
aatgacaaaggcgaagaaatctttacctttgggaaacacaaaggtaaacgtgtagaagat
atttttgacgaagaaccaggatattttggttggcttctcggtgccgacttcccgttgtat
accaaaaaaatccttacggctatcaaactccgcaaattatcggctactattaaatag
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