Capnocytophaga ochracea: Coch_0353
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Entry
Coch_0353 CDS
T00961
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
coc
Capnocytophaga ochracea
Pathway
coc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Coch_0353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coc03021
]
Coch_0353
Transcription machinery [BR:
coc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Coch_0353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
DUF6285
Motif
Other DBs
NCBI-ProteinID:
ACU91916
UniProt:
C7M639
LinkDB
All DBs
Position
complement(440731..441594)
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AA seq
287 aa
AA seq
DB search
MRQLKITKQVTNRETASLDKYLQEIGRVDLITADEEVELAQRIKAGDVAALEKLTKANLR
FVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNKIGSINKINKMYAYLEQANERVPSAEEIARELDMSVNDVKESMKNAGRHI
SMDAPLVEGEDSNLYDVIRSNESPNPDKSLILDSLRTEIERALETLTPREADVVRLYFGL
SDQHAMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgagacaactaaaaattaccaaacaggtaaccaaccgtgaaaccgcgtctcttgataag
tatttacaagagatcggtcgtgtagatttgattactgccgatgaagaggtggaattggca
caacgcattaaggcaggcgatgtagctgccttagaaaaactcaccaaagccaatttgcgc
ttcgtggtatcagtagctaaacaataccaaaaccaagggcttaccctgcccgaccttatt
aacgaagggaacttagggctcatcaaagcagcacaacgcttcgacgaaacccgtggattc
aaattcatttcctacgccgtatggtggattcgccaatctattctccaagccttagccgaa
caatcccgtattgtgcgcttaccgctgaataaaataggttctatcaacaaaattaacaag
atgtatgcttatctcgagcaagccaatgaacgcgtaccttcagccgaagaaattgcacgt
gagttagatatgtcagtaaacgatgtaaaagaatcaatgaaaaatgcagggcgtcatatc
tctatggatgcgcctttggtggaaggagaagattctaatctttacgacgtgattcgcagt
aacgaatcgcctaaccccgataagtcgcttattttagattcgttgcgtaccgagattgag
cgtgcactcgaaacgcttacccctcgcgaagccgatgtagttcgtttgtatttcggtctt
tccgaccagcacgcaatgaccctcgaagaaataggtgaaaccttcgacctcacccgcgaa
cgtgtacgtcaaatcaaagaaaaagcaatacgtcgccttaaacacacttcccgtagtaaa
attctaaaaacatatttaggatag
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