Capnocytophaga ochracea: Coch_0403
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Entry
Coch_0403 CDS
T00961
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
coc
Capnocytophaga ochracea
Pathway
coc02020
Two-component system
coc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Coch_0403
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Coch_0403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coc03021
]
Coch_0403
Transcription machinery [BR:
coc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Coch_0403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
LacI
Rsbr_N
DUF3606
Motif
Other DBs
NCBI-ProteinID:
ACU91966
UniProt:
C7M6H8
LinkDB
All DBs
Position
510629..512095
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AA seq
488 aa
AA seq
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MLKQNLQLKLSQKLSPQQIQLMKLVQLPTLAFEQRVKQEMEENPALESGREEDALDEFHD
EFDNSADEYNDNDVIDMDDINIDEYLSDDEIPDYRLHANNYSDDDEDRDIPFSAEVSFHQ
SLINQLNTFTLSDEDYLIAEFLVGSIDDTGYIRRSIQDLTDDLAFTQNIYTEEEHVEQIR
QQIIFQLDPAGVGAADLQECLLVQLRRKKQTLAIGLAIEMLTEAFEAFTKKHYAKLQQRF
LVTEEQLKEAVQEVERLNPKPGSSYVGNNVHIEQIIPDFTVKVVDNELELSLNGRNAPEL
HVSKEYSTMLDTYKKSKEKSNSQKEAVFFIKQKLDSAKWFIDAIRQRQQTLLITMDAIME
HQREYFLTGDELKIKPLILKDIADKVGMDISTVSRVASSKYVTTPYGTKLIKDFFSESMK
NDQGEDVSTREIKQILQHIIAKEDKSKPLPDDELAQLLKERGYPIARRTIAKYREQMDIP
VARLRKEL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaacagaatttacaacttaaactctcacagaaactctcacctcagcaaatacag
ctgatgaaactcgtgcaactccccactcttgcctttgaacaacgcgtaaaacaagagatg
gaagaaaaccccgccttagaatcagggcgcgaagaagatgctcttgatgagtttcacgat
gagttcgataactctgccgatgaatataatgataacgatgtaattgatatggacgatatc
aacatcgatgaatacctcagtgatgacgaaatacctgactatcgcttgcacgctaataac
tatagcgacgacgatgaggatcgcgatattcctttcagcgcagaggtatcgttccaccaa
tctcttatcaaccaattgaacacctttaccctctcggatgaagattacctcatcgctgag
ttcctcgtgggtagcatagacgatacaggctatatacgccgttctattcaagaccttacc
gacgacttggctttcacccaaaatatctatactgaagaggagcacgtagagcaaatacgc
caacagattatcttccaattagaccctgcaggagtaggcgctgccgacttgcaagagtgc
ttgctcgtacaactgcgtcgcaaaaaacaaacacttgcgataggattggcaatcgaaatg
cttaccgaagcctttgaggcgtttactaaaaagcattatgccaaactgcaacagcgcttt
ttggtaactgaagaacaactaaaagaagcagtgcaagaggtggaacgtctgaatcctaaa
cctggaagttcctacgtgggcaacaatgtgcatatagagcaaattatccctgattttact
gtaaaagtggtagacaacgagttagaactctccctcaacggacgtaatgctcctgaacta
cacgtttctaaggaatatagcactatgctcgacacttataagaagagtaaagaaaagagc
aattcacaaaaagaagcagtgttctttatcaaacagaagttggattcggctaagtggttt
atagatgctattcgtcagcgacaacaaacgctcctcatcacaatggatgctataatggaa
caccaacgcgaatacttcctcacaggtgacgaactgaaaataaaaccgcttattctcaaa
gatattgccgacaaggtaggtatggatatttctaccgtttcgcgagtagcgagcagtaaa
tatgtaactaccccttacggtaccaagctcattaaagatttcttttcggaatctatgaag
aacgaccaaggagaagacgtttctacccgtgaaatcaagcagatattacaacatatcatc
gctaaggaagacaagagtaaacccctccccgatgatgaattggcacagcttctcaaagag
agaggttaccccattgcgcgtcgcactatcgccaaataccgcgaacaaatggatatacct
gtagcgcgcctcagaaaagagctgtaa
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