Capnocytophaga ochracea: Coch_0433
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Entry
Coch_0433 CDS
T00961
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Coch_0433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coc03021
]
Coch_0433
03400 DNA repair and recombination proteins [BR:
coc03400
]
Coch_0433
Enzymes [BR:
coc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Coch_0433
Transcription machinery [BR:
coc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Coch_0433
DNA repair and recombination proteins [BR:
coc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Coch_0433
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ACU91996
UniProt:
C7M6K8
LinkDB
All DBs
Position
546010..550296
Genome browser
AA seq
1428 aa
AA seq
DB search
MAREKNTAVPKFDKISIGLASPESILAVSRGEVTKPETINYRTHKPERDGLFCERIFGPV
KDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERVGHINLVVPIAHIWYFRSLPNKIG
YLLGLPSKKLDMIIYYERYVVIQPGIAKGPEGEDLQYLDFLSEEEYLAITESLPADNQYL
EDTDPNKFIAKMGAECLLELLERLDLDALSYDLRHKANNESSKQRKTEALKRLQVVEAFR
ESQRNRENKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLME
IKAPDVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLLG
KRVDYSARSVIVVGPELKMYECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDKK
EPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGD
QMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYITKGRKSTPEYP
IKGEGSAFYSAEEVNIAYNEGKLSLNAFIKVKVRDLDENGNVYYPVVETTTGRVLFNELV
PLEVGYINEVLTKKSLRDIIGRILKATSIPVTGDFLDKIKNMGYRFAFKGGLSFSLGDII
IPQEKANMIAEANGLVDGIMMNYNMGLITNNERYNQVIDVWTSTNAQLTELAMKRISTDQ
QGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSSVGGGEIIENPILSNFKEGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGVEVRALKKNEE
VVETLGERVLGRVSLHDVYNPLTEELIVGAGEEITEKIVDKIEAAPIDMIEVRSALTCEA
KHGICAKCYGRNLSTGRMVQKGEAVGVVAAQSIGEPGTQLTLRTFHAGGVAGNVSEENKT
EARFDGVLEIEDLRVVRGKDNEQNPVDVVVRSSELRVLDPTTKMVLQTHDIPYGAHIFVK
DKEEVKKGTLLFQWDPYNAVIISEYSGKIAYEDIEQGVTYQVEIDEQTGFQEKVIVESRN
KKLIPTLLITDKNGETLRSYNLPVGAHIMVDNNSKIEEGKVLVKIPRSSAKAGDITGGLP
RVTELFEARNPSNPAIVSEIDGVVSFGKIKRGNKEVIVTSRSGEERKYLVKLSSQILVQE
NDFVRAGKPLSDGSVTPDDILRIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVIVRQM
MRKVEIQDPGDTLYLEGQLVHKDDFIEENDRLFGKKVVEDVGDSENLKAGQIVSLRELRD
ENSLLKRSDKNLVIARDVIPATAMPVLQGITRASLQTKSFISAASFQETTKVLNEAAVSG
KVDFLDGLKENVIVGHRIPAGTGLKEYEKIIVGSKADLEPVVEKKKSR
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagaaaaaaatacagctgttcctaaatttgataagatttcgattggtttggcc
tctcctgaatctatcttagccgtttcacgcggtgaggttactaaacctgaaactatcaac
tatcgtactcacaaacctgaacgcgacgggttgttttgtgagcgtatttttggtcctgta
aaggactatgaatgtgcttgtggtaaatacaaacgcattcgttataaaggcatcgtctgc
gaccgttgtggcgtggaagtaaccgagaaaaaagtacgccgcgaaagagtaggacatatc
aaccttgtggtgcctatcgctcacatttggtatttccgctcattacctaacaaaataggt
tatttgttagggcttccttcgaaaaagttggatatgattatctactacgagcgctatgta
gttatccaaccaggtattgccaaaggaccagaaggtgaagatttacaatacttagacttc
ctttcagaagaagaatatctcgctattactgagagtcttcctgctgataaccaatattta
gaagatactgaccctaataagttcattgctaaaatgggggctgagtgtcttcttgaactc
ttagaacgtttggatttagacgcactttcttacgacttgcgtcacaaagctaataatgaa
agttctaaacaacgcaaaactgaagctcttaaacgcttacaagtggtagaggcgttccgc
gaatctcaaagaaaccgcgagaacaagcctgaatggatgataatgaaggtgattcctgta
attccccctgaattacgcccgttagtaccgctcgatgggggacgttttgcgacttccgac
cttaacgatctttacagacgtgtgattattcgcaataaccgtctaaaacgcttgatggaa
atcaaagctcctgacgtgattttgcgcaatgagaaacgtatgcttcaagagtcggtagat
tcacttttcgacaacacacgtaaatcatcagctgtaaaaacagagtctaatcgtccgctt
aaatcactttctgactcattgaaaggtaagcaagggcgcttccgtcagaacctcctcggt
aaacgtgtagactattcagcacgttcggtaattgtggtaggtcctgaactcaaaatgtac
gaatgcggtttgccaaagaatatggcagccgaactctataagccgtttgtaatacgtaag
ctcatcgagcgcggtattgtgaaaacggtgaaatcagctaagaaaatcattgacaagaaa
gagcccgtagtatgggatatcttggagaatgtaattaaaggtcaccctgtactactgaac
cgtgctcctactttgcaccgtctgggtattcaggcattccaacctaagctcatcgaaggg
aaagcaatacagttgcacccgcttgtgtgtacagcgttcaatgccgacttcgacggtgac
caaatggcggtgcacttgccattaggtcctgaggctatcttagaggcacaactcttgatg
ttggcttcacacaatatcctcaaccctgccaatggttcgcctattactgtaccttcacaa
gatatggtcttggggctttactacatcaccaaaggtcgtaagtctacccctgaatatcct
attaaaggggagggttcagctttttattcagcagaagaagtgaatatcgcttataacgaa
gggaagctcagcttaaacgcttttattaaagtgaaagtgcgtgacctcgacgaaaatggc
aatgtgtattaccccgtagtagaaactaccactggacgtgtgctcttcaatgagcttgta
cctttggaagtaggctacatcaacgaggtacttaccaaaaaatcattgcgtgatatcatc
ggtcgtatcctaaaagctactagcattcctgtaacgggagacttccttgacaaaatcaag
aatatgggataccgctttgcctttaaaggcggattgtcgttcagtttaggcgatattatc
attccacaagaaaaagctaatatgatagccgaagctaacggactcgtagatggtattatg
atgaactataatatgggtctcattaccaataacgaacgttataatcaggtgattgacgtg
tggacatctaccaatgcgcaacttactgaattggcgatgaaacgcatcagtacagaccaa
caagggttcaactcagtgtatatgatgctcgactccggagcgcgtggttctaaggagcaa
attcgtcagcttaccggtatgcgtggtttgatggcaaaacccaagaaatcgagcgtaggg
ggtggtgaaatcatcgagaaccctatcttgtcgaattttaaagaaggtctatctatcctc
gaatactttatctctacccacggtgcccgtaaaggtcttgccgataccgctttgaaaaca
gccgatgcgggttacttaactcgtcgtttggtagacgtatcgcaagacgtaatcatcaac
accgaagattgtggtaccttgcgtggagtagaagtacgtgccctcaaaaagaacgaggaa
gtagtagaaactcttggcgagcgcgttttaggacgtgtgtcgctccacgatgtatacaat
cctctcactgaagaacttattgtgggtgctggtgaagaaattactgaaaaaatagtagat
aaaatagaagccgctcctatcgatatgatagaagtgcgctcggcacttacctgtgaagca
aaacacggtatttgtgcaaaatgttacggtcgcaacctttctaccggacgtatggtacag
aaaggggaagccgtaggggtagttgctgcccagtctatcggtgaaccaggtacccagctt
accttgcgtaccttccacgcaggtggggttgcgggtaacgtatcagaagaaaataaaact
gaagcccgttttgacggtgtactagaaatagaagacttacgcgtagttcgtggtaaagac
aacgaacaaaaccctgtggacgtagtagtgcgttcatctgagctccgcgtgcttgaccct
actaccaaaatggtacttcaaacacacgatatcccttatggagcgcacatctttgtaaaa
gacaaagaagaagtgaaaaaaggaactttactcttccaatgggatccctataatgcggta
atcatctcggaatactctggtaaaatcgcttatgaagatatcgaacagggagttacttac
caagtggaaatagatgagcaaacaggcttccaagaaaaagtgattgtagaatcgcgtaac
aagaagctgattcctaccttgctcatcactgataagaatggtgagacgctccgctcttac
aacttgcctgtgggtgctcacattatggtggacaacaacagcaagattgaagaaggtaag
gtgcttgtgaaaataccgcgtagctctgccaaagctggggatattacaggggggcttcct
cgtgttaccgagctcttcgaagcacgtaacccatcgaaccctgccatcgtatccgaaatt
gacggggtagtatcgttcggtaaaatcaaacgcggtaataaagaggtaatcgttacctca
cgctcgggcgaagaacgcaaatacttggtgaaattatcgagccaaatcttggtacaagaa
aacgactttgtacgtgcaggtaaaccactttctgacggctctgtaacacctgatgatatc
ttgcgtattaaaggaccatcggcagtacaacagtatttagtaaacgaagtacaagaggta
tatcgcttgcaaggggtgaaaattaacgataaacactttgaggttatcgtccgccagatg
atgcgtaaagtggaaatccaagacccaggtgatactctttacctcgaaggtcagttggtt
cacaaagacgactttatagaagaaaacgaccgcttgtttggtaagaaagtagtagaagat
gtcggagattctgaaaacttaaaagcgggacagatagtgagcttacgtgaattgcgcgat
gagaactcactactcaaacgctccgataagaacttggtaatcgctcgcgatgtgattcct
gctactgctatgccagtgctacaaggtatcactcgtgcatcgctacaaaccaaatcgttt
atctcagcagcttctttccaagaaacaaccaaggtattgaacgaagcagcggtaagtggt
aaggtagacttcctcgacggcttgaaagaaaatgtaatcgtaggtcaccgtataccagca
ggtactggacttaaagaatacgagaaaatcatcgtaggctctaaagctgatttagaaccc
gtagtagaaaagaaaaaatcgagataa
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