Capnocytophaga ochracea: Coch_0467
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Entry
Coch_0467 CDS
T00961
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Coch_0467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coc03019
]
Coch_0467
03009 Ribosome biogenesis [BR:
coc03009
]
Coch_0467
Enzymes [BR:
coc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Coch_0467
Messenger RNA biogenesis [BR:
coc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Coch_0467
Ribosome biogenesis [BR:
coc03009
]
Prokaryotic type
rRNA helicases
Coch_0467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ParB_N
RecG_N
Motif
Other DBs
NCBI-ProteinID:
ACU92030
UniProt:
C7M6P2
LinkDB
All DBs
Position
597641..599395
Genome browser
AA seq
584 aa
AA seq
DB search
MNLFEQLGLNEPILKAISDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFP
LLQLIDTDSRVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEEQARSLK
KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPQEKST
WLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATD
VAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKIKTIEKM
IGQPFEQKQLPSGMEICEIQLYHLANNLKNTEVNPAIDDYLPAIYKELKNVDRDELIKKI
FSVEFTRFFNYYKNAENLSVENERESRSRGNSDEVRYFINIGERDGYDWKSLKDFLKATL
NLGRDDVFKVDVKNSFSFFNTDADLSDLVMDTFNDFQLDGRFINVELSTKGAGRDRGGSK
RGNDDGRKHGNDEGRNRKKGQRESRKQKTAEALQQAFKKKKKRK
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttgaacaattaggtcttaatgaacctatcctcaaagccatcagcgatatg
ggctttgaaactccttctgaaattcagcaaaaagccatccctactcttttagcaaatggt
gctgatatggtagctttagcccaaacgggtactggtaaaacagccgcttttggctttcct
ctcctccaacttatcgatactgatagccgtgtaactcaaggtcttatcctttcacctaca
cgcgaactctgcttgcaaatcgcttctgaactccgcaattatgctaagtacctccctaag
gtgaacgtagtggcggtatatggcggtgcaagtatcgaggaacaagcgcgtagcctcaaa
aaaggcgcacaaattatcgtggctactcctgggcgtatgcaagatatgatacgccgtaac
ttcgtagatatcagccatatcaactattgtgtgctcgacgaagccgacgaaatgctcaat
atgggcttctatgaagatattaccgcaattctatcgcatacccctcaagaaaaaagcact
tggctcttttcggctactatgcctaacgaggtggctaagatagcgcgtaagtttatgcgt
aagcctattgaaataacagtaggaactcgcaatcaggctactaacaccgtgcaacacgag
tactatatagtgagcggtcgccatagataccaagccctaaaacgcctcgccgatgccaac
cccgatatcttctcagtagtgttttgccgcaccaaacgcgatactcaggcagtagccgaa
aaactcattgaagacggttacaatgccgctgcccttcacggcgatttgagtcagaatcag
cgcgatttggtgatgaaatccttccgcgcacgccaaatacaaatgcttgtcgctaccgat
gtcgctgcccgcggtattgatgtagacgatatcacccacgtaattcactaccaattgccc
gacgaaatagaaacctacaaccaccgcagtgggcgtacaggtcgtgctggtaaatcggga
atttcgatggtaattttgccaaaaagcgaggtaaagaaaatcaaaactatcgaaaagatg
atagggcaaccttttgagcaaaaacaattgccatcgggtatggaaatctgcgagatacag
ctctatcacttggctaacaacctcaaaaatacagaagtaaaccctgctatcgacgattat
ttgcctgctatctataaagaactgaaaaatgtagatcgcgatgagttgatcaaaaaaata
ttctcagtagagtttacgcgtttcttcaattattataaaaatgccgaaaacttatcggta
gagaacgagcgtgaaagccgcagtaggggtaatagcgatgaagtgcgctatttcatcaac
ataggtgaacgcgatggctacgactggaaatcgctcaaagatttcctcaaagcaaccctt
aatttaggtcgtgatgatgttttcaaagtagatgtaaagaacagtttctctttcttcaat
accgatgccgacctctccgatttggtgatggatacctttaacgacttccaattggacggt
cgcttcatcaatgtagaactctctaccaaaggtgctggcagagaccgtggcggaagcaaa
cgcggaaatgatgacggtaggaaacacggcaacgatgagggtagaaatcgcaaaaaagga
caaagagaaagtcgcaaacaaaagactgctgaagctctccaacaggcttttaaaaagaag
aaaaaacgtaaataa
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