Capnocytophaga ochracea: Coch_0788
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Entry
Coch_0788 CDS
T00961
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Coch_0788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coc03019
]
Coch_0788
Messenger RNA biogenesis [BR:
coc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Coch_0788
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
DUF4407
Motif
Other DBs
NCBI-ProteinID:
ACU92345
UniProt:
C7M8H5
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All DBs
Position
complement(950655..952223)
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AA seq
522 aa
AA seq
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MDSTVIISIAVFIIALFIGFAIAKSLEKKNASKIILNAKNEADVLLKNAKAEAENIKKDK
IFQAKEKFLELKAEHEKTITAKDKKMAEAEKRIRDKESQVSNELAQNKRLKDELEKKTEE
ADFRLQTLDKKQEEIDRLHKSQVQQLEVISGLSAEEAKKLLTDSLRSEAQADAMAYIQNT
IEEAKLTAHQEARKIIINTIQRIGTEEAVDNCVSVFNLESDEVKGRIIGREGRNIRALEA
ATGVEIIVDDTPEAIILSCFDSVRREIARLSLHKLVTDGRIHPARIEEVVEKTTKQIEEE
IVEIGKRTVIDLGIHGLHPELVKCVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLNP
KLAKRAGLLHDIGKVPQIESETPHALLGMEWAEKYGEKPEVCNAIGAHHDEIEMTSLLSP
IVQVCDAISGARPGARRQVLDSYIQRLKDLEDAAFTFQGVKKAYAIQAGRELRVIVESER
VTDDKAAELSFNLSQKIQTDMTYPGQVKVTVIRETRAVNIAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggatagtacagttattataagtattgcagtttttatcattgcccttttcatagggttc
gctatcgccaaatcgctggaaaagaagaacgcctctaaaatcattctcaacgctaagaat
gaagccgacgttcttctgaaaaacgctaaagccgaagctgaaaatatcaaaaaagacaag
atattccaagcaaaagagaagttccttgaactaaaagctgaacacgaaaaaacaatcact
gccaaagataaaaaaatggcagaggctgagaagcgtatacgcgataaagagtcacaagtg
tccaatgaattggcacaaaataagcgcctaaaagatgagttggaaaagaaaacagaagaa
gccgactttcgcttgcagacactcgataaaaaacaagaagaaatagaccgcctacacaaa
agtcaggtacaacaattagaggttatttcaggcttgtctgccgaagaagctaagaaacta
ctcaccgattcattgcgcagtgaagcccaagccgacgcgatggcttatatccaaaatacc
attgaagaagccaagctcactgctcaccaagaagcccgcaaaatcatcattaataccatt
cagcgtataggcactgaggaagcagtagacaattgcgtatcggtattcaatctcgagtct
gacgaggtgaaaggtcgtatcatcggtcgtgaagggcgcaatatccgtgccctcgaagca
gctactggggtcgaaatcattgtagacgatacccccgaagcgattattctctcttgcttc
gactcggtacgtcgcgaaatcgcacgcctttctttgcacaagctcgtaaccgacgggcgt
attcaccctgcacgcattgaagaagtggttgaaaaaactaccaaacaaatagaagaagaa
atcgttgaaataggtaaacgcaccgtaattgacctcggtatccacggattgcaccccgag
ttagtaaaatgtgtaggacgtatgaaataccgttcgtcatatgggcagaacctcttgcaa
cactctcgcgaagtagccaagctctgcggagtaatggcagctgagttaggcttgaaccct
aaacttgccaaacgtgccggacttttacacgacatcggtaaagtaccgcagatagaaagt
gagactcctcacgctctcctcggtatggaatgggcagagaaatacggcgaaaaacccgaa
gtgtgcaatgctatcggggcacaccacgacgagattgagatgacctccttgctttcgcct
atcgtacaagtatgcgatgctattagtggagctcgtccaggagcacgtcgtcaagtactc
gattcgtatatacaacgtctcaaagacctcgaagatgctgctttcactttccaaggcgtg
aagaaagcctatgcaatccaagcaggtcgtgagttacgtgtaatcgtagaaagcgaaaga
gtaaccgacgataaagccgcagaactttcattcaacttatcgcaaaaaatccaaaccgat
atgacctacccaggtcaagtgaaagtaacggtaatacgtgaaactcgtgctgtgaatatc
gcgaagtaa
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