Capnocytophaga ochracea: Coch_0830
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Entry
Coch_0830 CDS
T00961
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Coch_0830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coc03019
]
Coch_0830
03016 Transfer RNA biogenesis [BR:
coc03016
]
Coch_0830
Enzymes [BR:
coc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Coch_0830
Messenger RNA biogenesis [BR:
coc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Coch_0830
Transfer RNA biogenesis [BR:
coc03016
]
Prokaryotic type
tRNA degradation factors
Coch_0830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
ACU92386
UniProt:
C7M940
LinkDB
All DBs
Position
991941..994169
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AA seq
742 aa
AA seq
DB search
MKKTNKTQKQGKSGKPKKNKSLAKRNKQELIKAIFSVLQEHPEESFNYKQIAAKLHITDA
PRRDMLVKQLVQLKEKKRIVEIDRGKYQAIPMQHYYVGTLDVSARGNGYVIVDGLDNDIF
VAQNFLNKALHGDLVEVYVFPRFRNRNKMEGEISKVLERNKVRFVGTVQMHKNFAFVVPT
DARMYTDFFVLKDKLNGAQDGDRVIVRIEDWKDKSDSPMGVVEQILGKPGEQTTEMHSIL
AEYGLPYTYPEEVEAFAKKLDLSITDEEIARRRDMRENLTFTIDPRDAKDFDDALSFKLL
ENGNYEIGVHIADVSHYVKEGTILDEEAYNRATSVYLVDRVVPMLPEVLCNFACSLRPDE
DKYTFSAVFEMNKKAEVVDIWIGRTVTHSSFRFAYEEAQSVIEQAKVGEGYTIPAETSIT
DKERAIPAEVVEAILTLNTLAEKLRRKRMRLGAITFDKVEVKFDLDENGNPTGVYFKESK
EANKLIEEFMLLANRKVAEYVAKMKKTFVYRVHDEPDADKLQQFNAVISRFGYSLNLNNR
QTTTDSLNNLLEEVKGKKEQNLVDTLAIRSMAKATYTTKNIGHYGLAFEYYTHFTSPIRR
YPDVMVHRLLQLYLDNAPSQPEAEYETKCKHSSQMESLAASAERDSIKYMQVKYMEAHKN
QQFAGVISGVTEWGIYVEITVNKCEGLVRARDIKDDYYTFDEQQYALVGQATGKTYQLGD
EVMIRVKNTDLMKKQLDFELID
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaacaaataaaactcaaaagcaaggaaaatcaggaaaacctaaaaagaataag
agtttagctaaacgcaacaagcaagagcttatcaaagcgattttctcggtgttacaagaa
caccccgaagagagctttaactacaagcaaattgctgccaaactccacattaccgatgca
ccacgtcgtgatatgctggtgaaacaactcgtacaactgaaagagaaaaaacgcattgta
gaaatcgaccgtgggaagtatcaagctatccctatgcaacactattatgtaggtacgctt
gatgtgagtgcgcgcggtaatggttatgtaatagttgatggtttagacaacgacattttt
gtagcacagaattttctaaataaagctctccacggcgatttggtggaagtgtatgtattt
ccacgttttagaaatcgcaataagatggaaggagaaattagtaaggtattagaacgcaac
aaagtgcgctttgtaggtactgtgcaaatgcacaaaaactttgcttttgttgtccctacc
gatgcccgtatgtatactgatttctttgtgttaaaagataaactcaatggtgctcaggac
ggcgaccgtgtgattgtacgcatagaagattggaaagacaaaagtgattcgcctatgggg
gtagtggagcagatactcggtaaaccaggtgaacaaactaccgaaatgcactctatctta
gccgaatatggtctgccgtacacctatccagaagaggtagaagcctttgctaaaaagtta
gacctttctattactgatgaggagattgcccgtcgtcgtgatatgcgtgaaaacctcact
ttcactatcgaccctcgtgatgcaaaagactttgacgatgcactgtcgttcaaacttttg
gagaatggcaattacgagataggagtacatatcgccgatgtatcgcactacgtaaaagaa
ggtactatattagatgaagaggcttacaatcgtgctacttctgtgtatttggtagatagg
gtagtgccaatgttacccgaagtgctctgtaacttcgcttgttcactccgtcctgatgaa
gataaatacaccttttcggcagtgtttgagatgaataagaaggctgaagtggtagatatt
tggataggacgcaccgtaacacactcgtcatttaggtttgcttacgaagaagcacaatca
gtaatagagcaagccaaagtaggggaggggtacaccattcctgctgaaacttccattacc
gataaagagcgtgcaatacctgctgaggtagtagaggctattctcacactcaatacctta
gccgaaaaacttcgccgtaagcgtatgcgtttgggagctattacttttgataaagtagaa
gtgaaattcgacctcgatgagaatggcaaccctacaggcgtatatttcaaagaaagcaag
gaagccaacaaactgattgaagagtttatgctcttggctaacagaaaggtagctgagtat
gtagccaaaatgaaaaagacattcgtataccgcgtacacgatgaacccgatgccgataaa
ctgcaacagttcaatgcggtaattagtagatttggttatagcttgaacttgaacaaccgt
caaaccactaccgattcacttaataatctcttagaagaagtaaaaggcaaaaaagaacaa
aacttagtcgatactttggcaatacgttcaatggcaaaagctacttatactactaaaaac
ataggacactatggtttggcgtttgagtattatacccatttcacttcgcctatacgccgt
tatcccgatgtgatggtacaccgtcttttgcaactctatttagataacgccccttcacaa
cccgaagctgaatatgaaaccaaatgcaaacactcgtcacaaatggagagtttagcagcc
tcagctgagcgtgattctatcaaatatatgcaggtgaaatatatggaagcccataaaaat
cagcagtttgcaggagtgatttcgggtgtaaccgaatggggtatttatgtagaaattacg
gtcaacaaatgcgaaggattggtacgcgctcgtgatatcaaagatgattattacactttc
gacgaacaacaatacgccttggtaggacaagccactggcaaaacctatcagcttggcgac
gaagtaatgatacgtgtgaaaaacaccgacctgatgaaaaagcaattagattttgaactg
attgattag
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