Capnocytophaga ochracea: Coch_1173
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Entry
Coch_1173 CDS
T00961
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Coch_1173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coc03021
]
Coch_1173
03400 DNA repair and recombination proteins [BR:
coc03400
]
Coch_1173
Enzymes [BR:
coc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Coch_1173
Transcription machinery [BR:
coc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Coch_1173
DNA repair and recombination proteins [BR:
coc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Coch_1173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF4249
Motif
Other DBs
NCBI-ProteinID:
ACU92726
UniProt:
C7M4T6
LinkDB
All DBs
Position
1383614..1384606
Genome browser
AA seq
330 aa
AA seq
DB search
MALFNFQKPDKVIMIESSDFEGRFEFRPLEPGYGLTIGNALRRVMLSSLEGFAITSVKFD
KVGHEFSTISGVREDVTEIILNLKQIRFKRQIEDIENETATITVSGKRQLTAGDFQKALS
GFQVLNTDLVICNMDSSASFTIEITIEKGRGYVSAEENAKPNAPIGVIATDAIFTPIKNV
KYSIENYRVEQKTDYEKLVFEIKTDGSIHPKQALTEAAKTLIHHFMLFSDERITLEADEI
AQTDTYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVETLGDLVSFNKADLMKFRNFG
KKSLIELEELVVNKGLVFGMDTSKYKLDKD
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcattattcaacttccaaaaaccagataaagttataatgattgaatcatctgatttc
gaaggacgatttgagtttcgccctttggagccagggtatggtttaacaataggtaacgca
ttacgaagagttatgctttcttcgttagaaggttttgcaatcacttctgtgaaatttgat
aaagtaggacacgaattttctactatatcaggagtaagagaagatgttactgaaattatt
ctcaatttgaaacaaatacgttttaaacgccagattgaggatatagaaaacgaaacagca
actattactgtttctggtaaaagacaattgactgccggtgattttcaaaaagctctttca
ggttttcaagtattaaatactgatttggtgatttgcaatatggattcttcagcttctttt
acaatagagattactattgaaaaaggacgcggttatgtttcggctgaggaaaatgcaaaa
ccaaatgcgccgataggtgtaattgctactgatgcaatttttacccctattaaaaatgtg
aaatattctattgaaaattatcgtgttgaacaaaaaacagactacgagaagttagtcttt
gaaattaaaaccgatgggtctatacaccctaaacaagcactcacagaagctgcaaaaaca
ctcattcatcactttatgctgttctctgacgagagaattactttagaggctgatgaaata
gcacaaactgatacttatgatgaagaatcattgcatatgcgccagttgctaaaaactaag
ttggtggatatggacttatccgttcgtgcactcaattgtttgaaagctgccgaagtagaa
acattaggtgatttggtatctttcaataaagccgatttgatgaagtttagaaacttcgga
aagaaatcattaattgagcttgaagagttggtagtcaataaaggtttagtgtttggtatg
gacacctcgaagtataaattggataaagattaa
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