Capnocytophaga ochracea: Coch_1692
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Entry
Coch_1692 CDS
T00961
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Coch_1692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coc03019
]
Coch_1692
03016 Transfer RNA biogenesis [BR:
coc03016
]
Coch_1692
Enzymes [BR:
coc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Coch_1692
Messenger RNA biogenesis [BR:
coc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Coch_1692
Transfer RNA biogenesis [BR:
coc03016
]
Prokaryotic type
tRNA degradation factors
Coch_1692
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_2
Motif
Other DBs
NCBI-ProteinID:
ACU93237
UniProt:
C7M7P3
LinkDB
All DBs
Position
2020853..2023060
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AA seq
735 aa
AA seq
DB search
MIPEVKKEIIELGDGRTITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLP
LTVDYREKFAAAGRFPGGFFKRETRPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLI
SHDENVMPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGQFIVNPSREQLEASDIDIM
VGASKDFVAMVEGEMDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRTYEPEV
ENEEVKAKVYPLAYEKCYAIAKENTTKQERGEKFNAVKEECLALFTEEELEELTPIITRY
FDEAEKEAVRNLILNENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTL
GTSREANVIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP
EDCPYTVRVVSEILESNGSSSMATVCAGTLALMDAGVQMVKPVSGIAMGLITDGERYAVL
SDILGDEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGKIT
DTIAKPNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTNTTIVVEEVGELGII
EILGTDEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISEVS
WDRVDKIEDALKEGDIIEVKYLGIDPKTKKTRVSRKALLPRPPREDRPKSDKPYNGKPRN
DRNKGHNNHQKPRQE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgattccagaagtaaaaaaagaaatcatcgaattaggtgatggtcgtaccatcactatc
gaaactggcaagttggctaaacaagccgacggtgctgttgtggtgcaaatggggaatgcg
atgctattggcaactgtagtatcggctaaagaaatcaatcctgaaactgactttttacct
cttactgtagactatcgtgagaagtttgcagcagcaggtcgtttccctggaggctttttc
aaacgtgaaacacgacctagcgaccaagaaattcttacaatgcgcttggttgaccgcgta
ttgcgcccactattccctaaagattatcacgctgaaacacaagtgatgatccagcttatc
tctcacgacgagaatgtaatgcccgatgctttagcggggcttgctgcctctgcttgtttg
gctgtgtccgacattccttttgatggtcctatttccgaagtacgcgtaggtcgtgtaaac
ggtcaatttatcgtaaacccaagtcgtgaacaattagaagcttctgatattgatattatg
gtaggtgcttctaaagacttcgtggcaatggtagaaggagaaatggacgaggtgagcgaa
aaagatatggctgaagctatcaaattcgcacacgaggctatcaaacctcatattgaggca
caattgcgtttggctgaaaaagtaggtaagactgaaaaacgtacttatgagccagaagta
gaaaacgaggaagtaaaagcaaaagtatatcctttggcttacgaaaaatgctatgctatt
gccaaagaaaatacaaccaaacaagaacgtggcgagaagttcaatgcggtaaaagaagaa
tgcttagcactcttcaccgaagaagaattagaagaactcacgcctatcatcactcgttat
tttgacgaggctgagaaagaagccgtgcgcaaccttatcttaaacgaaaatatccgttta
gatggtcgtaacactacccaaatacgccctatttggtgtgaagtaggctacttgccatca
gcacacggttcatctatttttactcgtggtgaaacccaatcacttactaccgttaccttg
gggacttcacgcgaagcaaacgtgattgatttgccttcagaacaaggtgaagaacgtttc
tacttgcattacaacttccctcctttctctactggtgaagcacgccctttgcgcggaaca
tcacgtcgtgagataggtcacggtaacttggcacaacgcgccctcaaacgtatgattcct
gaggattgcccatataccgtgcgtgtagtttctgaaattttggaatctaacggttcatct
tcaatggcaactgtgtgtgcaggtactttagccttgatggatgcaggggtacaaatggta
aaacctgtatctggtattgctatggggctcatcaccgatggcgagcgttatgcagtactt
tcggacattttaggtgatgaagaccaccttggcgatatggactttaaggtaaccggtact
gccgatggtattaccgcttgccaaatggatatcaaaataaaaggtctttcttacgaaata
ctcgaaaaagctttgaaccaagcccgcgaaggacgtatgcacatcttgggcaaaatcact
gatacgattgcaaaacctaaccctactgtgaaacctcacgcgcctaaaatcgttaagatg
gatatgcctaaggaatacatcggggcattcatcggtacgggtggtaagaatatccaagac
ttacaagcgcgcaccaatactactatcgtggtagaagaagtgggcgaattgggcatcata
gaaatcttaggtactgacgaagcaggcattcaagaagctattgaggcagtaaatgcagtg
aaatttgaacctgtagaaggagaaacttatactgtgaaagtagtgcgcttagtagagttc
ggtgcttttgtagagtttgtacctggtaaagattcattgctccacatctcagaagtatct
tgggatagagtggataaaatagaagacgctcttaaagaaggtgatatcatagaagtgaaa
taccttggtatcgaccctaaaactaagaaaacaagagtatcacgcaaagccttgttgcca
cgtccaccacgtgaagatcgtcctaagtctgataagccttacaacggcaaacctcgtaac
gaccgcaataaaggacacaataatcaccaaaaaccacgtcaagaatag
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