Capnocytophaga ochracea: Coch_1894
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Entry
Coch_1894 CDS
T00961
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Coch_1894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coc03400
]
Coch_1894
Enzymes [BR:
coc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Coch_1894
DNA repair and recombination proteins [BR:
coc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Coch_1894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ACU93439
UniProt:
C7M8R0
LinkDB
All DBs
Position
complement(2278510..2281839)
Genome browser
AA seq
1109 aa
AA seq
DB search
MKELLQLFAENSTYKSLLTEIKAHHNTVANGLAGASLSLLIANVYTNTKRPLLILLPDKE
ESAYLLNDLETLVGEQVLFFPDSYRRPYQIEDTDNANVLLRAEVLNRLSNSGQPLIVVSY
PEALFEKVITRKQLEQNTLKISKGDQLTIELLNEVLFSYNFNRTDFVTEPGEFSVRGGIV
DVFSFSNNEPYRIEFFGNEVESIRTFDVETQLSTTQLSKITIIPNVENKEGNEVRQSFLE
YISEQTLLISKETSTFGAKIDKLFTKATDIYEKLPNEVKHSTPDVLYCQSEDLLNQMGRF
QQININLPSSFSKGEKEIVFRTTPQPSFNKQFELLISYLNDKHTEGYQNYILCGSEQQAK
RFHDIFEEMEQKVHYQTLLFSLHAGFIDNEHKLNVFTDHQIFERYYKFQLKNGYAKKQAI
TLKELMQLEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLIYGDRDVLFVSIHALHKI
TKYNGKDGKPPKIYKLGSGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYM
QNELEASFLYEDTPDQSKATAEVKADMESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG
KQVAVLVPTTVLAFQHFQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELANGQLDIIIG
THQIVGEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMA
ARDLSVINTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMI
QRLLPDARVAIGHGQMDGKKLEETMLAFMDGAYDVLVATTIIENGLDVPNANTIFINNAH
NFGLSDLHQMRGRVGRSNKKAFCYFITPPLVAMSDGARKRIEAIAQFSDLGSGLNIAMKD
LEIRGAGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDTQ
IDTDFELLFPDTYVNRVAERLNLYNELSNLPNEEALQQYQRNLTDRFGKLPPQAIDLLNS
VRVKWLATRMGIEKLVMKNGKMTGYFISDQNSPFYQSERFQKVLLFVQRYPNRCRMQEKE
TRNGLRLLLIFEGINTVYQALKVMQLLDA
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagagttattacaattattcgcagaaaatagtacttataaaagtttattaactgaa
attaaagcacatcataataccgttgccaatggtttggcaggggcttctctgtccttactc
atagctaatgtttatactaataccaagcgtccgctattgatactcttgcccgacaaagaa
gaaagtgcctatttgttaaacgacttagagaccttagtaggcgaacaagtactcttcttt
cctgatagctatcgccgtccgtatcaaattgaagataccgataatgccaacgtgttactg
cgtgctgaagtgctcaatcggctgagcaatagtgggcaacctctgatagtagtctcctac
cccgaagcgctcttcgagaaagttatcactcgtaagcaattggagcaaaataccttaaag
attagcaaaggagaccaactaaccattgaactcttgaacgaagtgcttttctcctataat
ttcaatcgcactgattttgtaaccgaacctggcgagttttcagtacgcggagggattgtt
gatgttttttctttctcaaataacgaaccttaccgcattgaattctttggcaatgaagta
gaaagtattcgcaccttcgatgtcgaaacacagctctcaacaacacagctttctaagatt
actattatccctaacgtcgaaaacaaagaaggtaatgaggtacgtcagtcatttttagag
tatatcagcgaacagacccttttaatatctaaggaaacatctacttttggagcaaaaatc
gacaagctcttcactaaagctactgacatttacgaaaagcttcctaatgaagtaaaacac
agtacacccgatgtgctatattgtcaatcagaagatttattaaaccaaatggggagattt
cagcaaataaatataaatcttccctcatctttctccaaaggcgaaaaagagattgttttc
cgcactacaccacagccctcatttaacaagcaattcgagctacttatcagttatttaaac
gataaacacactgagggataccaaaactatatcctctgtggcagtgagcaacaagccaaa
cgcttccacgacatctttgaggagatggaacaaaaagtgcattaccaaacactattgttt
tctctacacgcaggctttatagataatgagcacaagctgaatgtctttactgaccatcaa
atatttgagcgttactacaaattccagctgaagaacggatatgctaaaaaacaagctatc
acgctcaaagagttaatgcaattagaagtaggcgactatgtaacccacatcgaccacggt
attggtaagtttgctggattacagaagatagaggttgaaggcaagcaacaagaggctatc
aaactgatttacggcgaccgcgatgtcctattcgtaagcattcacgccctacataaaatc
actaaatacaacggtaaggacggcaagccacccaagatatacaaattaggttctggagcc
tggaaggcgctcaagcagaagacaaaaacaagagtgaaggaaatagccttcaacttgatt
cagttgtatgctaaacgtaaggaatctaaagggtatgcatactctcacgacagctatatg
cagaacgaactggaagcctctttcctatatgaagatacacccgaccaaagcaaagctact
gccgaagtaaaagcagatatggagagtccaaaacctatggacagattggtgtgtggtgat
gttgggtttggaaaaaccgaagtagctattcgcgctgccttcaaagcggtagacaacggc
aagcaggtagcggtattagtacctactacggtactcgcttttcagcactttcaaaccttt
agccagcgtatgaaagacttccctgtgcgcattgattatcttaaccgattccgcacagct
aaagaaaaaaaaatcatcttagaagaactggcaaatggtcagttagatatcatcatcgga
actcatcagatagtaggcgaaaaagtagcttataaagatttaggtctactgatagtagac
gaagagcaaaagtttggtgtaggcgtaaaggataagctcaaaactctcaaagaaaacctc
gatgtgctcaccctcactgctacacctatcccccgaaccttacagttcagcttaatggca
gctcgcgacctatcagtaatcaatacaccaccccctaaccgctaccctatcgattctcag
gtagttcctttcagcgaagagataatacgcgatggcattcgttatgaaattcagcgaggc
ggacaagtgttctttatgcacaaccgtgtagagaatattcaggaagtagcaggtatgatt
caacgcctattacccgatgcccgtgtagccattggtcacggacaaatggacggaaaaaaa
ttagaagaaacaatgttagcctttatggacggtgcttacgatgtattagtagctactact
atcattgaaaatggtttagatgtacccaatgctaataccatctttatcaataatgcacat
aattttggcttatccgatttacatcaaatgcgtggacgtgtaggtagaagtaataaaaaa
gctttttgttatttcatcacccctccgttggtagcgatgagtgatggtgctcgaaagcgt
attgaagctatagctcagttctctgatttgggaagcgggttaaatattgctatgaaggat
ttagaaattcgtggagctggagacctcttaggcggggaacaaagtggatttatcaatgag
ttaggcttcgaaacttatcagaaaatattgcaagaagctatagtagagctcaaagaaaat
gagttctcagaactatatcacactgccgaagaagataaaacttacctcaccgatactcaa
atagacaccgattttgaattgctctttccggatacctatgtcaatagagtggcagaacga
ctcaatctttataatgaactgagtaatttacccaatgaggaagctttacagcagtaccaa
cggaatcttaccgaccgttttggcaaacttcctccccaagctatcgacttgctcaacagt
gtgcgagtgaaatggttggctactcgtatgggaattgaaaagctcgtgatgaaaaacggt
aagatgacaggctattttatctccgaccaaaacagtccattttaccaaagtgagcgtttt
caaaaggtgctactctttgtacaacgttaccctaacaggtgtcgtatgcaagagaaagaa
acccgtaacgggttgcgtttgctccttatttttgaaggaatcaatactgtgtatcaagcc
ttaaaagtaatgcagttattagatgcatag
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