Capnocytophaga ochracea: Coch_1895
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Entry
Coch_1895 CDS
T00961
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Coch_1895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coc03019
]
Coch_1895
03400 DNA repair and recombination proteins [BR:
coc03400
]
Coch_1895
Enzymes [BR:
coc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Coch_1895
Messenger RNA biogenesis [BR:
coc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Coch_1895
DNA repair and recombination proteins [BR:
coc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Coch_1895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SKI
Motif
Other DBs
NCBI-ProteinID:
ACU93440
UniProt:
C7M8R1
LinkDB
All DBs
Position
complement(2281881..2283782)
Genome browser
AA seq
633 aa
AA seq
DB search
MENEPLYILKKYWGYDGFRNSQEAVINSVLSGKDTLALLPTGGGKSITFQVPAMMKEGIC
IVVSPLVALMTDQVEALKNREIRALSLAGGLPYSELERLLDNALYGQYKFLYLSPERLQQ
ELVRSYLKAMSINLIVIDEAHCVSHWGKDFRPAYLQCKWLKEEFPNVPLLALTASATHQV
QQDILHHLGIENATVITTSLARPNIAYKVYKVSDKWHELLQLLRKTEGSAIVYLRSRNGC
IQLAELLQNHGISAAYFHGGLPAEEKNKKLSMWLLNDVRVMAATNAFGMGIDKPDVRFVI
HWDIPQTLEDYFQEAGRAGRDGNPAEAILFYGKIDVENANKLLKDYLVDIPFLKLLYAKL
NAYFQIAIGEGQEGVFSFFFPDFWKRYQLSPIKSYNGLQVLDRMSIISLSQQFYKKVTLH
ITAPAPQLITYLQTHRYLKNLVIYLIRSYPLIYSQPIALEMEKITELTELDYRDIIKNLE
HLHNDGMAILKNEASDIQIVFNVPRDDDRTINSISKNLKEYNHTKLSLQEAVFRYLQNED
TCRNIQLLEYFGEKSEKPCGVCSNCIAKLPPSKVDKKEVKKAVWSLLKSKPITPNELFIA
LPFPEKDINKVLEELLYMQKIAYNNCNELVVNS
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgaacctctgtacatactcaaaaagtattgggggtacgatggttttcgcaac
tctcaagaagctgttatcaactcggtattatccggaaaagataccttagccttattgcct
acgggtggaggaaagtctattacttttcaagtgcctgctatgatgaaagaaggcatctgt
atagttgtttctcccttagtagccctaatgacagaccaagtagaggcgcttaaaaataga
gaaatacgtgcactatcgttagcgggaggtctcccctactctgagttggaacgcttgcta
gacaatgctctctatgggcaatataaattcttatacctgtcccctgaacgtctgcaacag
gaattggtgcgctcttatctcaaagcaatgtctattaacttaatagtgatagacgaagca
cattgtgtatcacattggggtaaagattttcgtcctgcttatttacagtgtaaatggctg
aaagaagaatttcctaacgtcccattattggcactcacagcttcggcaacgcatcaagta
cagcaagatatcttacatcatttaggtatagaaaatgctactgttatcactacttcttta
gcacgccctaatatcgcttacaaagtgtataaggtttccgataaatggcacgagttacta
caactgttaagaaagaccgaaggaagtgctatcgtatacttgcgcagcagaaatggttgc
atacaattggctgaactattgcagaatcacggtatctcagcagcctattttcacggaggt
cttcctgccgaagaaaagaataaaaagctcagtatgtggttgctgaacgatgtgcgtgta
atggcagctaccaatgctttcggaatggggatagacaaacctgatgtgcgtttcgtaatt
cattgggatatacctcaaaccttagaggactattttcaagaggctggacgtgcaggtcgc
gatggtaacccagccgaagctatcctattctatggtaaaatcgacgttgaaaatgctaat
aaactgctaaaagactacttggtagacattccttttctcaagctactttatgcgaaactt
aatgcttattttcaaatagcaataggtgaaggacaagaaggggtttttagtttctttttc
cccgacttctggaagcgttatcagctatcgcccataaagtcctataatggtttgcaggtg
ttagaccgaatgtctattatttcactcagccagcaattttacaagaaggttactttgcat
attacagctcctgcccctcaacttattacttatttacaaacgcatcgttatctaaaaaat
cttgttatctatctcataaggtcttaccctcttatctacagtcagcctatagctttggag
atggaaaaaatcactgaactcacagaactcgactatcgtgatatcatcaaaaatttagaa
catttgcacaacgatggaatggctatcttaaaaaacgaagcttctgatattcaaattgtc
tttaatgtgcctcgtgatgatgatcgcactatcaatagtatttctaaaaacttaaaagag
tacaatcacaccaagctaagcttgcaagaagcagtattccgctatcttcaaaatgaggat
acttgtcgcaacattcagctcttagaatacttcggtgaaaaatccgagaagccttgtgga
gtatgttcaaattgtattgccaaactacctccttcaaaagttgataaaaaagaggttaaa
aaagcggtttggagtttattgaagtctaaacctataacccccaatgagctctttatcgca
ttgccgttccctgaaaaagatatcaataaggttttggaagaacttttgtatatgcaaaaa
atagcttacaacaactgtaatgaattagttgttaattcctaa
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