Capnocytophaga ochracea: Coch_1951
Help
Entry
Coch_1951 CDS
T00961
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Coch_1951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coc03019
]
Coch_1951
03400 DNA repair and recombination proteins [BR:
coc03400
]
Coch_1951
Enzymes [BR:
coc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Coch_1951
Messenger RNA biogenesis [BR:
coc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Coch_1951
DNA repair and recombination proteins [BR:
coc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Coch_1951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
DUF5552
HHH
Motif
Other DBs
NCBI-ProteinID:
ACU93495
UniProt:
C7M8W6
LinkDB
All DBs
Position
2343652..2345841
Genome browser
AA seq
729 aa
AA seq
DB search
MEMTKDDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLE
GTAIVISPLIALMKNQVDAMRGISSTDSIAHVLNSSLTKNEIREVMEDISAGKTKLLYVA
PESLIKEEYANFLKTVPISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPIVALT
ATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQNSKKSGI
IYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIGKPIAEQ
EIGQALLQDIVAYAETSSSRRKFILHYFGEEFDEVNGEGANMDDNVRFPKEKKEAKDDVV
KLLNVIIATKQKFKAKEIVNTLIGKVSAIIKAHRIDEQEFFGIGKEKDDAYWMALLRQVM
VNGLIRKDIETYGVMFITDKGKEFLKDVPSFMMTEDHSYEEEPEDINSANAVAADPVLLE
MLKDLRKKVAKQKGVPPFVVFQDPSLEDMALKYPITIQELTNVHGIGEGKAKKYGSEFVK
LIERYVEENDIVRAEDLIVKTTGSNSALKLFIIQNIDRKLPLPDIAQAKGLEMDEFLKEM
EQIVYSGTKLNIDYWVNEIFDEEQQEELHEYFMEAESDKISLASKEFAGDYEDDELRIYR
LKFISEVAN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgacaaaagatgatttacacaatgccctgaaacactactttgggtttgaagcg
tttaaagggcatcaagaagaaattattaccagtgtaattaataaagagaacacctttgtt
attatgcctacaggtggtggtaaatcattgtgttaccaattacctgccttagtcttggag
ggaactgctattgttatctctccgcttatcgctttgatgaaaaaccaagtagatgctatg
cgtggtatttcgtcaactgatagtattgcccacgtgctgaactcttcgcttactaaaaat
gaaattcgcgaggtaatggaagacatcagtgcaggcaagactaagttgctatacgttgcc
cccgagtcgcttatcaaagaggaatatgctaactttctcaaaacagtacctatttccttt
gtagcggtagatgaggcgcactgtatctcggaatggggacacgatttccgtcctgagtac
cgcaatattagaaccattatcgagcgtttgggcagtaatatacctattgtagcgcttact
gctacggctactcctaaggtacaagaagatattttgaagaacttaggaatgcaggaggct
aacgtgtttaagtcgtcgttcaaccgtccaaacttgtattacgaggtacgccctaaaact
aaaaatgtagatgccgatatcattcgttttgtgaaacagaacagtaaaaaatcagggatt
atatactgtcttagccgtaaaaaggtggaagacctcgcacaaaccttacaagtaaacggc
atttcggcagtgccttatcacgcaggattagatgccaaaacacgcgccaaacaccaagat
atgttcttgatggaagaggtagatgtggtagttgcaactattgcttttggtatgggtatt
gacaaacccgatgtgcgctttgtaattcaccacgatattcctaaaagtatagagagttac
tatcaagaaaccggacgtgccggtcgtgatggtggtgaagggcattgcttggctttctat
tcctataaagatgtagagaagctggaaaaatttatgataggcaaacctatagctgagcaa
gaaataggacaagcactcttgcaagatattgtagcctatgccgaaacgtctagttcgcgc
cgtaaatttatcttacattactttggtgaagagtttgacgaggtgaatggcgaaggtgct
aatatggacgataatgtacgttttcctaaagaaaagaaagaagctaaagacgatgtggtg
aaattgctaaacgtaattattgctaccaaacagaaatttaaagctaaagagattgtaaat
acgcttattggaaaagtaagtgctattatcaaagcacaccgtattgacgaacaagagttc
tttggtattggtaaggaaaaagacgatgcttactggatggcacttctccgtcaggtaatg
gtaaacggactcatacgcaaagatatagaaacttacggagtgatgtttatcaccgacaaa
ggaaaagagtttttaaaagatgtaccttcatttatgatgactgaagaccacagttatgaa
gaagaacccgaagatatcaacagtgctaatgccgtagcagccgaccctgtacttcttgaa
atgctcaaagatttgcgtaagaaagtagcaaaacaaaaaggggtacctccgtttgtggta
ttccaagacccttcgctagaagatatggctctcaaataccctattactattcaagagctt
actaatgtacacggtataggtgaaggcaaggctaagaaatatggtagtgagtttgtaaag
ctcattgagcgttacgtagaagagaatgacattgtgcgcgctgaggatttaatagtaaaa
actacagggtctaactcagctttgaaattgtttatcattcagaatatagaccgcaaattg
cctttgcctgacatcgcacaagccaaaggattggaaatggatgagttcctcaaagaaatg
gagcaaatagtatacagtggtaccaagctgaatatcgattattgggtgaatgaaatcttt
gatgaagagcaacaagaagagcttcacgaatactttatggaagctgaaagtgataaaata
tcgttagcctctaaagagtttgccggtgattacgaagacgatgaattaagaatctaccga
ttgaaatttattagtgaggtagcaaattaa
DBGET
integrated database retrieval system
