Capnocytophaga ochracea: Coch_1973
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Entry
Coch_1973 CDS
T00961
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
coc
Capnocytophaga ochracea
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
coc03016
]
Coch_1973
Enzymes [BR:
coc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Coch_1973
Transfer RNA biogenesis [BR:
coc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Coch_1973
Prokaryotic type
Coch_1973
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Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
ACU93517
UniProt:
C7M8Y8
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All DBs
Position
2365078..2366754
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AA seq
558 aa
AA seq
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MITPEELREGRILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIKIGHAGTLDPLASGLLV
ICTGKFTKKITEIQDAVKTYTGTITVGATTPSYDKETEINAHYPTDHITPELIEQVRMQF
IGELTQTPPVFSAIKKEGKRLYEFARDGKEIEVPQRTIYIYSFNIDASQFPKLQFEVVCS
KGTYIRSLANDFGKALGSGGYLSALRRTKIGDFSVNDALTPDEFINIHIPKMQTKPIILT
TVFERFIDKNKTTLNDHFARKESTLNTQNNRKKSINEVYEEREREHLNKQQKQRHTSDLN
IEAIFPRKKKKKTSGIKYEFRYFLSMFSNTDKAIMLTLLILFGTIVTLMVIQLSSREKEI
MIEMALTPDDLPYEPPKLEEQTEAPDLSQAMNAKLTTNAYNQADADLRHTENFKTLDEIM
AERASKEMESAKEDLVSNNKMSSNLVISDDNTLQKTTKISSDNKVNKNTLVKYALSGRTG
NIPNPVFTCEKEGQVVIIITVDEAGRVIRTALDKMNSTTNDDCLIENSLLYASRARFNAV
TGKKEQTGTITYIFQSKR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgataactccagaagaacttagagaaggtcgtatcttgcttatcgataagcccctgcaa
tggtcgtcgtttcaagcagtgaacaaaatcaaatgggcaatactcaaacactataagctc
aagaagataaagatagggcacgcaggaacattagacccgcttgcctctggtttattggtg
atttgtacgggcaaatttactaagaagattaccgaaatacaagacgctgtaaaaacttat
acaggcactattaccgtaggggctactactccttcctacgataaggaaaccgaaattaat
gcccactaccctactgaccatatcactcctgaactgatagaacaagtgcgaatgcagttt
ataggggaactcacgcaaacgcctcctgtattttcggctatcaagaaagaaggcaaacgg
ctctacgaatttgcccgcgacggcaaagaaatagaagttcctcagcgcactatctatatt
tacagtttcaatatagatgcaagtcagtttcctaagttgcaatttgaggtggtatgtagc
aaaggcacctacatacgctccttggcaaacgactttggtaaagccttaggatctggtggc
tatctatctgcattgcgacgcactaagataggtgatttctcggtaaatgatgccttaacg
cctgatgaatttataaacatacatattccaaaaatgcaaacaaaacctattattctcact
actgtattcgagcgatttatcgataagaataaaacaactcttaatgaccatttcgctcga
aaagaatctactttgaacacacaaaacaataggaaaaaatctattaatgaagtgtatgaa
gagcgagagcgagaacaccttaacaaacaacaaaaacagcgacatacttccgaccttaat
atagaagccatttttcctcgaaaaaagaaaaaaaagacctcaggaatcaaatatgagttt
cgctactttctatcgatgttttcaaatactgataaggcaattatgcttactttactgata
cttttcggtacgatagtaacccttatggtgatacaacttagcagtagagagaaagaaata
atgattgaaatggcactcactccagatgatttaccttatgaacctccaaaattagaggaa
caaactgaagcgcctgatctttctcaagctatgaatgcgaaactgactactaatgcttat
aatcaagccgatgctgacttacgtcatactgagaattttaaaactttagacgaaataatg
gcagagcgtgcttctaaagagatggaaagtgctaaagaagacttggtgagtaataataaa
atgtcgtctaacttagtaatatcggacgataatactcttcaaaaaacaactaaaatttca
tctgataataaagtaaataagaatactttagtaaaatatgccttatctggcaggacagga
aatatacctaaccctgtatttacttgtgaaaaagaagggcaagtagtgattattattaca
gttgatgaagcaggaagagttattagaacagctcttgacaaaatgaattcaactaccaat
gatgattgccttatagaaaactcattactatatgctagcagagccagatttaatgctgta
acaggcaaaaaagagcaaacaggaactattacttatatttttcaaagtaaacgatag
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