Capnocytophaga ochracea: Coch_2035
Help
Entry
Coch_2035 CDS
T00961
Name
(GenBank) transcriptional regulator, TrmB
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
coc
Capnocytophaga ochracea
Pathway
coc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Coch_2035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coc03400
]
Coch_2035
Enzymes [BR:
coc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Coch_2035
DNA repair and recombination proteins [BR:
coc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Coch_2035
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
WHD_PriA_bact
ResIII
Zn_ribbon_PriA
Helicase_C
PriA_C
nSTAND3
TrmB
HTH_65
CjCas9_WED-like
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
ACU93579
UniProt:
C7M9J5
LinkDB
All DBs
Position
2436913..2439366
Genome browser
AA seq
817 aa
AA seq
DB search
MYFVDVILPLPLSKLFTYRINEDEAHFLQMGMRVAVPFGKSKVYTAIVHHIHTVEPSYDT
KDIEYILDETPIITPQQIEHWQWIADFYMCTLGEVLKSALPSAFLLESETIIEIAEKELN
STLFTDDEWQVYEALHYKTALKGSEVSKIIPKNKALKVMKSLVEKGAARISERIFEKYVP
KLIKYIRLSSEYQTEEGLQKALELLKRSEKQKKLIMAYFNYINREVLPLKAEKLLEEASV
STTVLKSVIEKGIFEEYYLQKDRVSFADSDVSTKKVLNEVQEEALHQIQKQFQTKNTVLL
QGVTASGKTEIYIELINQYLKAGKQVLYLLPEIGLTVHLINRFKNHFGKSLSVYHSKYST
NERIEVWNNVLNNSPKAQLIVGVRSSVYLPFRQLGLVIIDEEHDNSYRQFEPAPRMQARD
TAIMLANIFKAKTLLGSATPSLESMHNVKTEKYGFVYLSKRYADFLPPIIELIDIKDKHH
RKRMNGHFSDVLIKEITNTLSQGRQVLLFQNRRGYAPIVQCMQCGTVPQCPHCDVSLTFH
QSSNQLRCHYCGYAIPMPKACIACGSVDLRTKGFGTEQISKELEVLFPNIAIDRMDQDTT
NGKYGYEKILSKFEQQETQILVGTQMITKGLDFENIGLVGVMNADALIHSPDYRAYERSF
QLLLQVSGRAGRSAQQGKVFIQTYNPQYPVIQQVLQNDFRGMYQSQIEERQSFLYPPFVQ
MIKITLKHSNFNQVNESAEWFANTLREVFASQRGIDVLGPEFPPISRIRNEYLKDVLVKV
HPSEVSLRHTKEHIRRIETSFQAISNFRAIRVSYLVE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtatttcgtagatgtaatcttgccgcttccactttctaaactttttacctatcgtatt
aatgaagacgaagcacatttcctacaaatgggaatgcgcgtggctgttccattcggtaaa
tcgaaagtatacacggctatagtacatcatatacatacggttgagccttcttatgacact
aaagacattgaatatatcttagatgaaacgcctattattactccccagcaaatagaacat
tggcaatggatagccgatttctatatgtgcactttaggggaagtactaaaatcagccttg
ccatcggcttttttattagaaagtgaaacaataattgaaattgcagaaaaagaattaaat
tcaacactctttaccgatgacgagtggcaggtatacgaagccttacattacaaaacagcc
ctcaaaggtagtgaggtgagcaagataatccccaaaaacaaggcactgaaagtgatgaag
agcttggtagagaaaggagctgctcgcatttccgaaagaatatttgagaaatatgtacca
aaactcatcaaatacattcgtttatcttctgaatatcaaaccgaagaaggcttgcaaaaa
gccttagaacttttgaagcggtcggaaaagcaaaagaagctgataatggcttattttaat
tatatcaacagagaagtactgcctttaaaagcagaaaaattattagaagaagccagtgta
tcgacaacagtactaaaatcagtaatagaaaaaggcatttttgaagaatattacttacag
aaagaccgtgttagctttgctgatagtgatgtttcgacaaaaaaggtactcaatgaggta
caagaagaagctctccatcaaattcagaaacagtttcagactaaaaacacagttctttta
caaggggttaccgcctctgggaagactgaaatttacattgaacttatcaaccaatattta
aaggcaggaaaacaagtactctatcttcttcctgaaatcggcttgacggttcatcttatc
aaccgattcaagaatcactttggcaagagcctctcagtatatcattctaaatatagtaca
aacgaacggatagaagtttggaataatgtactaaataatagtcccaaagcgcaattgatt
gtaggtgttcgctcatcagtttacttgcctttcaggcaattagggcttgtaatcattgat
gaggagcacgataattcttaccgacagtttgagccagcccctcgaatgcaagcacgggat
actgctattatgttggcaaacattttcaaagctaaaactttgctgggttcggcaacgccc
tcgttggagagtatgcacaacgtgaagactgaaaagtacggatttgtatacttatcaaaa
cgctacgcagatttccttcctcctattatcgagcttatcgatattaaggataagcaccat
cgcaaacgtatgaacgggcatttttccgacgttctgataaaggaaattacgaatacttta
tcgcaagggagacaggtgcttctctttcaaaacagaagaggttatgctcctatcgtgcag
tgtatgcaatgtggcacggtgccccaatgtccgcattgcgatgtaagtctcacttttcat
caaagcagtaatcagttgcgatgccattattgcggttatgcaattcctatgcccaaagcc
tgtatagcttgtggaagtgttgatttaagaacaaaaggcttcggaacagagcaaattagt
aaagaattagaagtgcttttcccgaacatagccatagacagaatggatcaggatactacc
aatggtaaatatggatatgaaaaaatattatcgaagttcgagcaacaagaaacgcaaata
ttagtaggtactcaaatgatcacgaagggattagattttgaaaacataggtctagtaggc
gtaatgaatgccgatgctctcattcattctcctgactaccgagcttacgaaaggagtttt
caactattattgcaagtatcagggcgtgcgggaagaagtgcccaacaaggaaaagtattt
atacaaacctataacccacagtaccccgtaattcagcaagtattacaaaatgatttcaga
ggaatgtatcaaagtcagatagaggaacgccaatcctttttatatcctccttttgtacaa
atgataaaaataactctcaaacacagtaattttaaccaagtaaatgaaagtgctgagtgg
tttgctaatacacttcgtgaagtttttgcttctcaaagagggatagacgtcttaggtcct
gaattccctcctatttcgcgtatcagaaatgaatatctgaaagatgtcttggtgaaagta
cacccctcagaagtgtctttacgtcacactaaagagcatatcaggcgtattgaaactagt
tttcaagctatcagcaactttcgtgctattcgggtaagttatttggtggaataa
DBGET
integrated database retrieval system
