Corynebacterium pseudotuberculosis 1/06-A: Cp106_0315
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Entry
Cp106_0315 CDS
T02052
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cod
Corynebacterium pseudotuberculosis 1/06-A
Pathway
cod03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cod00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cp106_0315 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cod03021
]
Cp106_0315 (rpoC)
03400 DNA repair and recombination proteins [BR:
cod03400
]
Cp106_0315 (rpoC)
Enzymes [BR:
cod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cp106_0315 (rpoC)
Transcription machinery [BR:
cod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cp106_0315 (rpoC)
DNA repair and recombination proteins [BR:
cod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cp106_0315 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AER68419
LinkDB
All DBs
Position
331821..335831
Genome browser
AA seq
1336 aa
AA seq
DB search
MIDVNFFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITGVDEEARHSDQTTLEAEMLLEKKDVEADAKSEIAERAQKLEED
LAELEAAGAKADARNKVQKAADKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETI
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAEAEELREIINNGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKTEGEIGGQ
GAYQPATEDGPATGVYSSYAEALMARDRGVLGLQAKIRVRISHLRPPVEVEAEQFPEGWE
QGQTWLADTTLGRIMFNELLPWNYPYLEGVMVRKGGGSNKILLGDVINDLAATYPMITVA
QTMDKMKDAGFYWATRSGVTITMSDVLVLPNKEEILDRYEAEAAKIERKYWEQGALTERE
RYDRLVELWKEATDEVGNAVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTKQGIRVPVAVEVKDAQGNVTGYTGHSLIETSVAGRVASVDIKDSEGNVLVPAGENL
TDQLIEKLIAAGVAEVKVRSVLTCQTPTGVCAKCYGKSMATGKLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVHLEDEGNFYTL
TINPDDGSDVVVYEKLSKRQGLATVRVPMESNPGAMIERTLSEGDHVNVGDRLLRGPADP
HDVLEVLGRRGVEQHLVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG
TLVDLSEAKAANAEAIAAGGHPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI
NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDSY
GEFTGASVPLDEAYDL
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgtcaacttcttcgacgagctccgcatcggcctggctactgccgacgacatt
cgtcgttggtccaaaggcgaggtcaaaaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacggcctcttctgcgagcgaattttcggcccgacccgcgactgggagtgc
gcttgcggtaagtacaagcgtgtccgttacaagggcatcatctgtgagcgctgtggcgtt
gaggtgaccaagtccaaggttcgccgtgaacgcatgggccacatcgaactggctgcgccc
gtcacccacatttggtacttcaagggtgtcccgtctcgtctcggttaccttttggacctg
gctccaaaggatctcgagcgcatcatttacttcgcagccaacatcatcactggtgttgac
gaggaagctcgccacagcgaccagaccactcttgaggcagaaatgcttttggagaagaaa
gacgttgaggctgacgcaaagtctgagatcgcagagcgcgctcagaagctggaagaggat
cttgccgagctggaagccgcaggagctaaggccgacgcccgcaacaaggtgcaaaaggct
gcagataaagagatgcagcacatccgcgagcgggctgagcgcgagatcgatcgtcttgag
gagatctggcagacctttatcaagcttgctcctaagcagatgatcattgatgagaccatc
tatgaagaactcgtggatcgttacgaggattacttcaccggtggtatgggcgcggaggcc
atccaaacccttatccgcaactttgacctcgatgctgaggcagaggaactgcgcgagatc
atcaacaatggcaaaggccagaagaagatgcgcgccctcaagcgactcaaggttgttgct
gcattccagcgctcgggcaatgacccagctggtatggtgctcgactgcatcccggtgatc
ccaccggagctgcgtccgatggttcagcttgatggtggccgttttgctacctccgacctg
aacgatctctaccgtcgcgtgattaaccgcaacaaccgcctcaagcgcatgatcgacctt
ggtgctcccgagatcatcgtgaacaacgagaagcgtatgttgcaggagtccgtcgacgcg
ctctttgataatggtcgccgtggtcgtccggtcaccggtcctggcaaccgtccgctgaag
tccttgagcgatttgcttaagggcaagcagggtcgtttccgtcagaacttgctgggtaag
cgtgtcgactactctggtcgttccgttattatcgtcggtccacagctgaagctgcatgag
tgcggtcttcctaagctcatggctcttgagctcttcaagccgtttgttatgaagcgcctc
gtggaaaacgattacgcgcagaacatcaagtcggctaagcgcatggttgagcgtcagcgc
cctgaggtgtgggacgttctagaagaggcaatttctgagcatcctgtgatgcttaaccgt
gcacctaccctgcaccgcctaggcatccaggccttcgagcctaagctcgttgagggtaaa
gctatccagctgcacccactcgcgtgtgaggccttcaacgctgacttcgacggtgaccag
atggctgtgcacttgccgctatctgctgaagcacaggctgaggcgcgcatcctcatgctt
gcctccaacaacattctctccccggcatccggtaagccacttgccatgccgcgtctggac
atggtgactggtctttattacctcaccatggacaagactgagggtgagattggtggtcag
ggtgcataccagcctgctactgaggatggtccagcaacgggtgtgtactcctcctacgct
gaggcacttatggctcgcgaccgtggcgttcttggcctgcaggccaagatccgggtacgc
attagccatctgcgtccgccggtagaggttgaggcagagcagttcccagagggttgggaa
cagggacaaacctggttggctgataccactcttggccgcatcatgttcaacgagctcttg
ccgtggaactacccgtaccttgagggcgttatggtccgtaagggtggaggatcgaacaag
attctcttgggcgacgtgattaatgatctcgctgcgacctatccgatgattactgttgct
cagacgatggacaagatgaaggatgccggtttctactgggcaacccgaagcggcgtgacc
atcactatgtctgacgtgctcgttcttcctaataaggaagaaattcttgaccgctatgag
gccgaggctgcaaagatcgagcggaagtactgggagcagggtgctctgacagagcgcgag
cgctacgaccgtctggtcgagctttggaaggaggctaccgacgaggtcggtaatgccgtc
gagaagctctatccggatgacaacccgattcctatgatcgtgaagtccggtgctgccggt
aacatgcgtcagatctggacgctggccggcatgaagggcatggttgtgaactcaaagggt
gattacatcacccgaccgattaagacttccttccgtgaaggcctgtcggttcttgagtac
ttcaacaactctcacggttcgcgtaagggcctcgccgataccgctctgcgtaccgccgac
tcgggttacctcactcgtcgtctggtggacgttgcgcaggatgttatcgtccgcgaggat
gactgcggcaccaagcagggcattcgtgtcccagtggccgttgaggttaaggatgctcag
ggcaacgtcaccggttacaccgggcacagcctcatcgagacctctgttgctggccgcgtg
gcttccgttgacatcaaggattctgagggcaacgtcctggtaccagctggtgaaaacctc
accgatcagctcatcgagaagctcatcgccgcaggcgttgccgaggtcaaagttcgctcc
gtgcttacctgccagaccccgaccggtgtgtgcgctaagtgctatggcaagtccatggct
accggcaagctcgttgatatcggagaggcagtgggcatcgtcgctgctcagtccattggt
gagcccggtacccagctgacaatgcgtacgttccaccagggtggtgtcggtggtgacatc
accggtggtcttcctcgtgtccaggagctcttcgaggctcgtgttcctaagaatcgcgct
ccgattgcttctgtggcaggtaccgtacaccttgaggatgaaggtaacttctacaccctc
accatcaacccagacgatgggtcagatgttgtggtctacgagaagctctccaagcgtcag
ggtcttgctaccgtgcgggttcctatggaatccaacccgggtgccatgatcgagcgcacc
ttgtcagagggcgaccacgtgaacgtgggcgatcgtctgctacgcggacctgctgatccg
cacgacgtacttgaggttcttggccgccgtggtgttgagcagcacctcgtggacgaggtt
caggacgtgtaccgcgcacagggtgtggctatccacgataagcacatcgagatcatcatt
cgtcagatgctgcgccgcggcaccgtcatcgagtccggctcgacagagttccttccgggt
actctcgttgacctttcggaggccaaggccgctaacgctgaggctattgctgctggtgga
catcccgctgagctccgttcggagatcatgggtatcaccaaggcatcgttggctaccgag
tcgtggctgtccgctgcgtccttccaggagaccacgcgtgtgcttaccgacgccgccatt
aacaagcggtccgataagctgatcggcctcaaggagaacgtgatcatcggtaagctgatc
ccggcgggtaccggtatttcccgttaccgcaacatctccgtcaaaccgactgaggcagct
cgcaatgcggcttactcaatcccaacgtatggagattccatctatggcgatgacagctac
ggtgagttcaccggcgcttccgtgccactggatgaggcctacgacctctaa
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