Corynebacterium pseudotuberculosis 1/06-A: Cp106_0531
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Entry
Cp106_0531 CDS
T02052
Symbol
uvrD
Name
(GenBank) DNA helicase, UvrD/REP type
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cod
Corynebacterium pseudotuberculosis 1/06-A
Pathway
cod03420
Nucleotide excision repair
cod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cp106_0531 (uvrD)
03430 Mismatch repair
Cp106_0531 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cod03400
]
Cp106_0531 (uvrD)
Enzymes [BR:
cod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cp106_0531 (uvrD)
DNA repair and recombination proteins [BR:
cod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cp106_0531 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
Cp106_0531 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
AER68621
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All DBs
Position
546834..550058
Genome browser
AA seq
1074 aa
AA seq
DB search
MIDPIELSRLLKQKFPPTPQQAAVIGAELEPMLVVAGAGAGKTETMAARVVWLVANNIAN
PDRILGLTFTRKAAQQLSQRIRGRLEQLAGMDALKDIDPSGELSYKLEAIAPTVSTYDSY
AGSLIREYGLLLPVEPTSRLITETELFQIAYDIVINYSGSLDTQTQPVNATEKLLSLVSE
IDNHIVSPQDIVEETDAFLSVLDDVEVASKRGLNQILIGWKQRQIIRKQMLPMVAMLKQH
LAHNNLMTFGEQMSLAARLAEENPQVGASQRDRYSVVLLDEYQDTGHAQRVLLRSLFSGA
AVTAVGDPMQSIYGWRGATSANLERFREDFALGEEPAQKRELTVSFRNPPEVLQLANEVS
REVLGAPDNPRRTVQPLSSREEAPHGEVTLGFFPSAEKEREFVADQLAEAYKNRGESFTA
AVLVRKKRHSAPIALELQSRGVPVEIVGLSGLIDIPEVADLIAIAAMLIRPQDTKSALRI
LAGPHVGLGAADILALADRAANLAGRGKAEREEKKTDPLERLEQIIAETLPKAPESVVGL
AEAVADLDVPQEEGVATRYSHEGLRRLQLLASELRYLRTHSLGHSLPDLFADIERVFGIR
TEVLQREDPHSDGAPGTAHLDRFAEVVSDFARVPNATLSQFLDYLELSRSQGDGLEPGEV
QVRSDRVQILTVHKAKGLEWQIVSVMHADSSTYKTTTSTWLSNESAVPSALRGDAREDDS
LVGAPVWYIDSAESPADLKKQGEAHIAEFRAVEEEENARLFYVALTRAEERVLVTASTDI
TKASPPGPYAHLDMLRTKFPDCVVEWFDGESDDALEPPLPEIGVFPQELRPEGADAVKAA
MVDLPELIEDGELFERWEQEVTALIEEHHQLSTPVVPVELGLELTASDIVNLSQDPQAFA
RRRRRPVPFKPNSYAKRGTAFHQWLENRFGATALLDADELPGIDDALDGTELETLKARFL
DSEWADRTPEYVEHPFEVSIGEHIVRGRMDAVFRDADGRWIVVDWKTGQPPTEAAERRSV
SLQLAVYRLAWARLQGVDPSEVQALFHYVGRNFSYRPSELPDEASLARMLALNV
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgatagatccgatcgaactatcgcgattgctcaagcagaaattccctcctacgccgcag
caagcggcagtcataggagctgagctcgaacctatgctggtagtagctggcgccggtgca
ggaaaaacagaaaccatggccgcccgcgtggtatggctggtggctaataacatagcgaat
cctgatcgcatcctgggcctgacatttaccagaaaagctgcgcaacagctctctcaacgc
atccgaggtcggcttgaacaactcgcgggtatggatgcgctgaaggacatcgacccgagt
ggggagctgtcttataaattagaggctatcgctccgacagtttccacgtacgattcctat
gccggcagcctgatccgagaatatggtttgttattaccggtggaacccacctcacggtta
attacagaaaccgagctttttcagattgcgtatgacatcgttattaactattcagggagc
ttagatacacagacgcaacctgttaacgcgacagagaagctcttgtctttagtctctgaa
atagacaaccatattgtttcgccgcaggacattgtggaagagacagacgcatttttatcg
gtgctggatgacgtagaggtggcgtcgaaacgcgggctaaatcagatccttatcgggtgg
aagcagcgtcagataatccggaaacaaatgttgcccatggtcgcgatgctcaagcagcac
ttggcccacaataatcttatgaccttcggcgaacagatgtcgcttgccgccagacttgcc
gaggaaaatccgcaggtaggagcatctcagagggatcggtattccgtggtattgctggat
gaataccaggacaccgggcacgcacaacgggtgttgttacgcagcctctttagcggcgcc
gcagtcaccgcggtgggcgatccgatgcaatcaatttacggatggcgtggtgctacctct
gccaacctcgagcgctttagagaggactttgccctaggggaagaacctgcacaaaaacgc
gagctaacggtgagcttccgtaatcctcccgaggtcctccagttggccaacgaggtatct
cgggaagtcctgggagccccggataacccccgtagaacagtacaaccgctctcttcccgt
gaagaagcaccgcacggggaagtaacactgggatttttccctagcgcagaaaaagagcga
gaatttgtagccgatcaattggcagaggcttataaaaatcggggagagagttttaccgct
gctgttctagtgcgaaagaaacggcactctgctcccatcgcgttagaattgcaatcgcgg
ggagtacccgtggaaattgttggtttatctgggcttatagatatccccgaggtcgccgat
ctgattgcgatcgcagcgatgttgattaggcctcaagacacaaaatctgcgctacgaatt
ttagcgggtccgcatgtggggctgggcgcagcagatattctggcattagctgaccgtgcg
gctaacctcgcaggacgcggaaaagctgaacgggaagagaaaaagacagatccgcttgag
cgcctggaacagataatcgctgaaaccctgcccaaggcaccagaatcggtcgtgggattg
gcagaggctgttgcagatcttgatgtaccacaggaagaaggggtcgcaactcgctatagc
cacgaggggttgcgcaggctgcaattgctggcatctgagcttagatatctgcgtacgcac
agcttgggccactcattgccagatctttttgcagatattgagcgagtatttgggatccgc
accgaagtattgcagcgagaagatccacactcggacggtgctccaggcacggcacatcta
gaccgttttgctgaagttgtctcggattttgcgcgggttccaaatgcaacgctgagccag
tttttggattatcttgagctgagcagaagccagggagatggcttggagccaggagaagtg
caggttcgttctgaccgcgttcagatcctcactgtgcataaagctaaaggtctggagtgg
cagatcgtgagcgttatgcacgcagactccagcacctataagacaacaacgtcgacatgg
cttagcaacgagtccgcggtgccatcggcgcttcgaggagatgcccgagaagacgattct
ttagtgggagctcccgtttggtacatcgattctgcagaatcgccagctgatctgaaaaaa
caaggagaggctcacatcgcggaatttagggctgtggaagaggaagagaacgctcggtta
ttttatgtggctttgacccgtgcagaggagcgtgttctggttactgcgtcgactgacatc
accaaggcttcccccccggggccttatgcgcatcttgatatgctacgcactaaatttcca
gattgcgtggtggaatggttcgacggcgagagcgatgatgcccttgagccgcctcttcca
gagatcggagtttttccgcaagaattgcgccctgagggggcagacgccgtaaaagctgcc
atggtagatcttcctgagctgatagaagatggcgagctcttcgagcgatgggaacaagag
gtaactgcgctcatcgaggaacaccatcagttgagtaccccggttgtccccgtcgagttg
ggccttgagcttacggcctcggacatcgtgaatctttcacaggacccccaagcttttgct
cgaaggcgacgccgcccagttcctttcaagcccaatagctatgccaagcgcggaactgcc
ttccaccagtggcttgaaaaccgttttggtgccacagccctactggacgctgatgagctc
cctggtatcgatgatgcgctggatggaacagaactagagactttgaaagctcgctttttg
gacagcgagtgggcggaccggacccccgaatatgtggagcatccgtttgaggtttctatt
ggcgagcatatagtgcgaggccgcatggacgctgtgtttagggacgcagatggcagatgg
attgttgttgattggaagacgggacaaccccccacggaggctgcggagcgccgctctgta
tcgctgcagctagcggtataccgactagcgtgggcccgattgcagggcgtcgacccatca
gaggtacaagcactattccattatgtggggcgcaactttagctatcggcccagcgagctt
ccggatgaggcgtcgttagcccgaatgctggcgttgaacgtgtaa
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