Corynebacterium pseudotuberculosis 1/06-A: Cp106_0794
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Entry
Cp106_0794 CDS
T02052
Symbol
deaD1
Name
(GenBank) DEAD-box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cod
Corynebacterium pseudotuberculosis 1/06-A
Pathway
cod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cp106_0794 (deaD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cod03019
]
Cp106_0794 (deaD1)
03009 Ribosome biogenesis [BR:
cod03009
]
Cp106_0794 (deaD1)
Enzymes [BR:
cod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cp106_0794 (deaD1)
Messenger RNA biogenesis [BR:
cod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cp106_0794 (deaD1)
Ribosome biogenesis [BR:
cod03009
]
Prokaryotic type
rRNA helicases
Cp106_0794 (deaD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
Surface-like_ins_dom
Motif
Other DBs
NCBI-ProteinID:
AER68873
LinkDB
All DBs
Position
837529..839511
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AA seq
660 aa
AA seq
DB search
MSITDDATGGANEPDEKILSESQDNSQVNEGSITLDDVIADVDDSRVANTSEDTGSAQEA
DSDSNDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAF
ALPILSRINVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLS
GLRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPAD
KQVALFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRIL
EVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILV
ATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSI
ERATNAELIEMDLPTVDEVNESRKEKFADSITESLEDSQVAIFRNLIKAYAEEHDTPLED
IAAALATQARAGSEFLMKEPPPEKRRERRDRFDRDDRRGDRRDRGDRRDRGDRGSRFERS
GDMAVYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRITIAVDYTLVELPKGLPKSVFD
NLRDTRISGQLINIEKDNGRPGRRDDYRGDDRRGGYRRDRRDDRRGDRRDRGDRRDRYRG
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgatgacgccaccggcggcgctaacgagccggatgagaagattttgtcg
gaatctcaggacaattcgcaggtaaacgaaggcagcatcacacttgatgatgttattgct
gatgtagacgactccagggttgcgaacacttctgaggacaccggctccgcgcaagaagcg
gacagtgacagtaatgatggcttcgaggctttgggcctcccagacgcaatccttaaggca
gtcgccaaggttggctttgaaacgccgtctcctattcaggcacagaccatcccagtcctc
atggaggggcatgatgtgatgggtctggctcagaccggtacgggtaagaccgctgcgttt
gccctcccgattctttcccgtatcaatgtgaagaagcgccacccacaggcgctgatcctt
gctcctactcgcgagcttgctcttcaggttgcggactctttccagtcttttgcagaccac
ctcggagacattcatgttctgccgatctatggtgggcaggcctatggtatccaattgtcg
ggtcttcgtcgtggcgcgcagatcatcgtgggtaccccaggtcgtgttattgaccacctg
gaaaagggctcactcgatatctctaacctgaactatctcgttcttgacgaggcagatgag
atgctcagcatgggcttccaggaagatatcgagcgtattcttgaggatactcccgcggac
aagcaggttgctttattttctgcgactatgcccaacggcattcgccgtctgagcaagcag
tacatgaaggatcctcgtgagattcaggtgaagtccgagactcggaccaacaccaatatc
acgcagcggttccttaatgttgctcaccgtaacaagcttgatgccttgactcgaatcctt
gaggtcaccgagtttgaagcgatgattatgttcgtacgcacaaagcatgaaactgaagag
gtcgcagagaagctgcgtgctcgtggtttttctgccgccgccatcaatggcgatatcgca
caggcacagcgtgagcgcaccgtggaccaactcaaagatggtcgtctagacattcttgtg
gccacagacgtggcagcgcgtggtctggatgttgagcgcattactcacgtgttcaactac
gacattcctaatgacaccgaatcttatgttcaccgcattggtcgtaccggccgcgctggg
cgtagcggtgaggcaattctttttgttaccccacgtgaacgtcgtatgctgcgctccatt
gagcgtgctaccaatgcagagcttatcgaaatggaccttcctacggtcgacgaggttaac
gagtcccgtaaggaaaagtttgcagattccatcacagaatcgctagaagactcccaggtt
gcgattttccggaacttgatcaaggcctacgcagaagagcatgacaccccacttgaggac
attgctgctgccttggctacccaggctcgtgctggtagtgagtttttgatgaaggagcca
ccaccagagaagcgtcgtgagcgtcgcgatcgctttgaccgggacgatcgtcgtggcgat
cgccgggaccgcggcgaccgccgtgatcgtggtgaccgcggttctcgttttgagcgctct
ggcgatatggcagtgtatcgccttgccgtgggtaagcgtcagcatgttcgtccgggcgct
attgttggcgcactggcaaacgaaggcggattgagcaataaggactttggtcgtatcaca
attgctgtggactacacattggtggagcttcctaagggactcccaaaatctgtctttgat
aatctacgcgacactcgtatctcgggtcagctgattaacattgagaaggacaatggtcgt
ccggggcgtcgtgatgattaccgcggtgatgaccgtcgtggtggataccgtcgcgatcgt
cgtgatgatcgtcgtggcgaccgccgggaccgcggcgaccgccgtgatcgctatcgtggc
tag
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