Corynebacterium pseudotuberculosis 1/06-A: Cp106_1204
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Entry
Cp106_1204 CDS
T02052
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cod
Corynebacterium pseudotuberculosis 1/06-A
Brite
KEGG Orthology (KO) [BR:
cod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cod03019
]
Cp106_1204 (hrpA)
Enzymes [BR:
cod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Cp106_1204 (hrpA)
Messenger RNA biogenesis [BR:
cod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Cp106_1204 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
ResIII
AAA_30
AAA_11
NACHT
SLFN-g3_helicase
HA2_N
PhoH
TsaE
AAA_16
ABC_tran
AAA_23
AAA_25
Tc-38
Motif
Other DBs
NCBI-ProteinID:
AER69270
LinkDB
All DBs
Position
1310022..1314020
Genome browser
AA seq
1332 aa
AA seq
DB search
MSTAKHQPHNKRDIESKAIPTTPEEQRSLANFSRTDTELRSTKESLRAQLSQVSIAEERV
FLRRIHKASSKSAITAISADIQQAQIALSQKAALIPSITFPENLPVSSQRDAIAQAITNN
QVVIIAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLAARTVAERIAEELDQKIGSS
VGYAIRFDDRVSASTSIKLMTDGILLAEMQRDRFLNAYDTIIIDEAHERSLNIDFILGYL
KQLLPRRPDLKVIITSATIDPERFAQHFANADGEPAPIIEVSGRTYPVEILYRPLEIPDG
EKLIDVDPIDGLIQAIQELMGYGPGDILCFFAGEADIREAMDAIEAKRWKNVEVTPLFGR
LSNQEQHRVFSPHSGRRIVLATNIAETSLTVPGIHFVVDTGTARISRYSTRTKVQRLPIE
PISQASANQRSGRCGRVTDGIAIRLYSQQDFESRPEFTDPEILRTNLASVILRMASLKLG
DIENFPFIQAPDTRAIRDGFLLLRELGALADSAKTNSPLLTTVGRTLAKIPLDPRLARML
IAAEEFGCLREAYIVVAALSIQDVRERPLEKQSQADQLHARFKDTSSDFLSYLKLWEYIS
EKRTELSGNAFRRTMQSEFLHYMRIREWSDLIRQLRSIGEQIGWTNPDDIAGHLIPDNLH
KALLAGLLSHIGLRDGDSKEFIGSRNSRFLVFPGSSLAKRPPQFLMAAELVETSRLWARN
VAEIDPAWVEHIGKNLLKHNYSEPYWSTKRVAAMVHQRSTLYGVPIIADRPVGYASIDPR
AARDMFIREALVNGNWTTHHKFYRRNAEKLLSAAQIEEKIRRRDVVIDEDALYNFYDSRL
PDHITTGRSFDRWWKTAVHKTPHLLDFDLEKLRRGESANVNEEDFPDIWRRGSLEFGLTY
HFDPSAEDDGVTVLVPVPLLGGLDADGFEWLVPGLLEDLVTELIRSLPKHLRKTVVPAPD
FAHKITTMLDYRDGFLYQRIAECLSELGRPGISADDFNPNALPKHLKITFAAVDKRGRII
DRDKSLDSLKSRRSEQIRASVSRVSHAVEQSSAKEWTPQSLGTISQEVTTKVDGQLVTTY
PALVVTPEGISVKAMPTKREADISMFTATLTLLIKATPVNTQKMLNGLPLQQRVAIENYP
HGGATGFVNDAQVAVVRDLIIANGGAVRSPEEFSKLQTIIKPLVPSKVRAIVVELAPGIN
SYLRVKSEINNWTGPAIDDINNQLNFLLPPRAISQHGAHRLKHLPRYVQAITLRLEDMER
MPDRDTDRQSLVNRLERGLAQKIQKSGQGKSAHQVRDIQWLIQELRVGLFAQRLGTTQSV
SERKIAKAIEQL
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgcgaaacatcagccccataataagagggacattgagtcaaaggcgatccca
actactcctgaggagcaacggagcttggcaaacttctcccgaacagataccgagctacgc
tcaacaaaagaatctcttcgcgcacaacttagccaggtcagtatcgctgaggaacgagtc
ttccttcgtcgtattcacaaagcctcttctaaaagcgcaatcacagctatctccgcagat
atccaacaggctcagatagcgttatcgcagaaagcagcgctcattccctctatcactttt
cctgagaatctcccggtctccagccaacgcgacgctattgcacaagccattaccaacaat
caggttgtgattattgctggagaaacagggtcaggaaaaaccacccagatacccaaaatc
tgtctagagctaggtcgcggggtacgtggattaatcggacatacgcaaccgcgtcgactc
gcggcacgcactgttgccgagcgtatagccgaagaacttgaccaaaaaatcggttcttca
gtgggatatgccatccgctttgatgaccgtgtttctgcttctacatccatcaagctgatg
actgacggcatcctgctcgcagaaatgcagcgggatcgattcctcaacgcttatgacacg
ataattatcgacgaagcccacgagcgcagcctcaacatcgattttattcttgggtacctc
aaacagcttcttccgcgccgtcccgatcttaaagtcatcattacttctgccacgattgac
ccagagcggtttgcgcagcactttgccaacgcagacggtgaacctgcgcccattattgag
gtctccggacgtacgtaccctgttgaaatcctttatcgtccgcttgaaatccccgatggg
gaaaagcttatagacgtagatcccatcgatgggctcatccaagccatccaagagcttatg
ggatatggccccggcgatattctttgtttctttgctggcgaagcagatatccgcgaagcg
atggatgctatcgaagccaaacggtggaaaaacgtagaggtcacacccctctttgggcgt
ctctccaaccaagaacagcatcgagtcttttccccacattccgggcgccgaattgttttg
gctactaacatcgcggaaacctcgctgactgttcccggtattcattttgtcgtggacacc
ggaacagcccgtatttcaagatattccacccggaccaaagtccagcgtcttcctatcgag
cctatctctcaagcaagcgctaaccagagatcaggacgctgtggtcgtgttacagacggc
atagcaattaggttgtactcccagcaagactttgaatctcggccagaatttactgatcca
gagattttacgaacaaacttagccagcgtcattctccggatggcttccctcaaattggga
gacattgaaaattttccttttatacaagcacccgataccagagctatccgtgacggattt
ttactgctcagggagctaggagcccttgcagattcagccaaaacaaactccccactcctc
actacagtcggccgtactctggccaagatacctttggaccctcgtttagctcgcatgctg
atcgcggcagaagaatttggttgtttaagagaagcctacatagtggtagctgcgctgagc
attcaggatgttcgcgagcgtccgctagaaaaacaaagtcaagctgatcagctccacgca
cgttttaaagacacaagcagtgattttcttagctaccttaaactttgggaatacatatca
gaaaaacgcaccgaactttctggtaatgcttttcgacgtaccatgcagtccgaattctta
cactacatgcgtattagggaatggtcagatcttattcgtcagttacgtagcatcggcgaa
caaattggatggaccaacccagatgacattgcaggtcatctcatcccagataacctgcac
aaagctctcctagccggactactgtctcacatcggtttaagagatggcgattctaaggaa
ttcataggaagcagaaactccaggtttttggtgtttcctggctcctcattggccaagcgt
cccccgcaattccttatggcggcagagcttgtggaaacttcacggttatgggcgcgtaat
gtagcggagatcgatccagcgtgggtcgaacatataggtaaaaatctgctcaagcacaat
tattctgagccgtattggtctacaaagcgcgtagcagccatggtgcaccaaagatctacg
ttatacggtgttccgattattgctgatagaccagtcggatacgcttccatcgatcctcgt
gctgcccgcgatatgtttattagagaagccctagtcaatggtaattggactactcaccat
aagttttatcgtcgcaacgcagaaaaactactctcagctgcgcaaattgaagaaaaaatc
cgacgtcgcgatgttgtaatcgatgaagatgctctctataacttctatgattccaggctc
ccagatcacatcactacaggacgttcctttgaccgctggtggaaaacagccgtccataaa
acgcctcatcttctagactttgatctggaaaaattgcgccgaggtgagtcagcaaacgtc
aatgaagaagacttccccgatatttggcgccgaggttctttagaattcggcttaacctac
cactttgatcccagcgccgaagatgacggtgtcactgttcttgtgccggtacccttactg
ggaggactcgatgcagacgggttcgaatggctagttcctggtttgttagaagatctggtt
actgagctgatccgttctttaccaaaacacctgcgtaaaaccgttgttcctgcaccagat
tttgcccataaaatcaccaccatgctggattatcgcgatggtttcctctatcaacgcatc
gccgaatgcctatctgaattggggcgtcctggaatatctgcggatgattttaacccgaac
gcactccctaaacacctcaaaataacattcgctgctgtagataaacgcggacgtatcatt
gatcgggacaaatcgctcgattccctcaaatcccgacgttctgaacaaatccgagcttca
gtttcacgagtgtcccatgctgtcgagcaatcctctgctaaagaatggacgcctcagtct
ctaggcactatctcacaggaagtgactacaaaggtcgatgggcagctggttaccacgtat
ccagccctcgttgttaccccagagggtatttcggtcaaagccatgcccactaagcgtgag
gccgatatctctatgtttacggcgacactgacgttgctgattaaagcaacgcctgtaaat
actcagaagatgctcaatggcctcccacttcagcaacgagttgctatagaaaactatcct
cacggtggggccacaggctttgtcaacgatgctcaagttgcagttgtaagagacttgatc
attgctaacggtggcgcggtgagatcaccagaagagttttctaagttacaaacgattatt
aaaccattagttccgagtaaggtacgtgcaatagttgtcgagctagccccaggcattaac
tcttatctccgcgttaaatccgagataaacaactggaccggtccagccatcgacgacatt
aataatcagctcaatttcctccttccaccgcgggcgatatcccaacatggggcacaccgc
ctcaagcatctcccaaggtacgtgcaagcaatcacgcttcggctcgaagatatggagcgc
atgccagaccgggatacagacaggcagtcactagttaatcgactagagcgaggcttagca
caaaaaatccaaaaatctggacaaggaaaatctgctcaccaagtacgcgatattcagtgg
ttgattcaggaattacgtgtcggcctttttgcccaacggctagggactacgcaatcagtt
tctgagagaaaaatcgcaaaagcaatcgaacagctctaa
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