Corynebacterium pseudotuberculosis 1/06-A: Cp106_1547
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Entry
Cp106_1547 CDS
T02052
Symbol
rne
Name
(GenBank) Ribonuclease E/G family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cod
Corynebacterium pseudotuberculosis 1/06-A
Pathway
cod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cp106_1547 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cod03019
]
Cp106_1547 (rne)
03009 Ribosome biogenesis [BR:
cod03009
]
Cp106_1547 (rne)
Enzymes [BR:
cod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Cp106_1547 (rne)
Messenger RNA biogenesis [BR:
cod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cp106_1547 (rne)
Ribosome biogenesis [BR:
cod03009
]
Prokaryotic type
rRNA processing factors
Cp106_1547 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AER69604
LinkDB
All DBs
Position
complement(1684833..1688219)
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AA seq
1128 aa
AA seq
DB search
MAEETTKKVPARRATRKAEDTATQDTVVPVDRDAIGDRIRVHALAKLASVSSRELIATLA
TLGLTKVAQSTLTREEALKLLDAHHIDGYSAEEKLRHRVEKNVENEIHQIEEKVERELNP
DAEAAKLDDPEESEKLRRRIEKNVENEIHQIEEKVERELQDREVVREEDHQDSSENAVAE
DTTVVITEDEAAELLSDIEPEITPAPGLSAPAFPTPLFIAPTPAEELESNVDDSVEDDEE
SAQSRRRRRGRRGTGRGKRTDSEDSFSEDLEESPDSEDAGEEKTEELITEPVGIKGSTRL
EAQRRRRAEMREESRNKRHIVSEAEFLARRESVKRTMIVRERERSDHPGVVTQVGVLEDD
LLVEHFVTSDTQSSMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWRAAGLGG
RGRRIEQALKSGDQVLVQVSKDPAGHKGARLTTQISFAGRYLVYVPNGRTAGISRKLPAP
ERKRLKNILKEVVPKDGGAIIRTAAENVSAEAIAADVNRLHKLWNQIQELTEKEKNSKGA
KPVTMYEEPNMLVKVVRDLFNEDFSELIVDGDRAWNTVHAYIQSVAPELQDRLIKFDREA
HEDRDAFEVHRVDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEET
VTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLSENQDLVLRRLTEALGRDRTRHQISE
VTSLGLVQMTRKRLGTGLLETFATECEHCEGRGVIIHDDPVEQSVSDAAIEKSSRARSGK
AKAARKHGVAHQDPAQHPAAIAMQHHEEAGSAAGSNTSDASTADTSPVADTRTSIDDLAA
AVVIDDVELEKVVDSVASDVAEPGLLEPSKEKKGRRRRRGLRNSKRKDRGAADDVMDIVD
AALDRAFTEDPDEPSGADHLPLSGNKLSRSTTSVTYEEALAAFENSPRRKRAVRGNSVSD
HAPKPEDFKRIDVTEGAEEDTFASEASEETYSGSRRSRRVARKQGETRKAVENPTQSEAA
DDTESTGNVKIDSLRGRRRRAVRRRFQETNLAPLVVETAEEESTAKGRRRRRAVRKTVVK
APRKAVIGEESSGVYVKDETVPETREASSAGRGRRRVARRVRTATKRN
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaagagaccacaaaaaaggtgcctgcgcgtcgggcgacacgaaaggctgaggat
actgctacgcaggatacggtggtacctgttgatcgtgatgcgatcggcgaccggattagg
gtgcatgcgctggctaaattagcgtcggtaagttcacgtgaactcatcgctactcttgcc
acactagggcttactaaggttgcgcagtcgacgctgacccgcgaagaagccctgaagcta
ctcgacgcccaccacatcgacggctactcagccgaagaaaagctgcgccaccgggtggaa
aagaatgtggaaaatgagatccaccagatcgaagaaaaagtagagcgtgagcttaaccct
gatgctgaggccgccaagctcgatgatccggaggaatccgagaagctgcgccgacgaata
gaaaagaatgtggaaaatgagatccaccagatcgaagaaaaagtagagcgtgaactgcaa
gaccgagaggtagtgcgcgaggaagaccaccaggattcttctgaaaacgcagtagcggaa
gatacgaccgtagtgatcaccgaggacgaggcagcggagcttctttcagatatcgagcca
gagatcacgcccgctccgggactgtctgccccggctttccccacgccactgttcattgcg
ccgacgccagcggaagaactggaaagcaacgtcgatgactctgttgaggatgatgaggag
tcggcgcagtctcgtcgtcgccgtcgcggtcgccgaggcacagggagaggaaagcgaact
gattctgaggattccttctctgaggatctcgaggaatccccggacagtgaagacgctggt
gaggaaaagaccgaggaactgatcaccgaaccggtcgggatcaaagggtctacgcgcctg
gaagcgcagcgtcgtcgtcgtgcggagatgcgagaagaatcgcggaataaacggcatatc
gtttcagaagcagaattcttggcgcgccgggaatctgtaaagcgcaccatgattgtgcgg
gaacgcgagcggagtgatcatcctggagtagtgacccaggtgggcgttttagaagacgat
ctactagttgagcactttgttaccagcgatacgcagtcctcaatgatcggaaacatatat
ttgggacgcgtccaaaatgtgttgccgagcatggaggccgcatttatcgatattggaaaa
ggccgcaatggcgttctctatgcgggcgaagtggactggcgtgccgcaggcttaggaggc
cgggggcggcgtattgagcaagccctcaagtctggcgatcaggtgcttgttcaggtatcc
aaagatcccgcaggccacaagggtgcgcggttgaccacccagatttctttcgcagggcgt
tacctggtgtacgtgcccaacgggcgcaccgcgggtatttctcgcaagcttcctgctcca
gagcggaagcgcttgaagaatatcctcaaagaggttgtgcctaaagacggcggagctatc
atccgtaccgctgcggaaaatgtctctgcggaggctatcgctgcggacgtgaatcggttg
cacaagctgtggaatcagattcaagagctcacggagaaggagaaaaactccaagggtgct
aagcctgtcaccatgtatgaagagcccaacatgttggtgaaggtggtgcgtgatcttttc
aacgaggacttctcggagctgattgtcgacggcgaccgtgcttggaataccgttcacgcc
tatatccagtcagtagctcctgagctacaggatcgtctgattaagtttgatcgggaagca
cacgaggatcgcgatgcgtttgaagtgcaccgcgtagatgaacagctgcacaaggccttg
tcgcggaaagtgtggcttccctctggcggaaccttagtgatcgaccgtacagaagctatg
acagtcattgacgtgaacaccgggaagttcacgggttctggcggcaatcttgaagaaacg
gtaactcgtaataaccttgaggctgcagaagaaatcgttagacagatgcggttgcgcgat
cttggcggcatgatcgttgtggacttcattgacatggtcctttcagaaaaccaggatcta
gtgttgcgtcgactcaccgaggcactaggccgtgaccggacgcgtcaccagatttctgag
gtgacgtcgttaggcctggtgcaaatgactcgaaagcgtcttggcacgggcttgctagag
acttttgccaccgaatgcgagcattgcgagggccgtggagtcatcattcacgatgacccc
gtggaacaaagcgtttcggatgccgctattgagaagtcctcgcgcgcacgttccggaaag
gctaaggcagctcgaaaacatggggttgctcatcaagatccggcgcagcatcctgctgct
atagcaatgcagcatcatgaggaggctggctctgccgccggttccaatacctctgacgcc
agcactgctgacaccagccctgttgctgatactcgaaccagcattgatgatcttgccgca
gctgtggtgatcgatgacgtagagcttgagaaggtcgtggactccgtggcgagtgacgtt
gcggaacctggtttgctggagccatccaaagagaagaaggggcgcagaaggcgtcgcggc
ttgcgcaattccaagcgaaaggacaggggagcagcggacgatgttatggacatcgtcgac
gcggctttggaccgagcttttacagaagatccagacgagccctcaggtgccgatcatctg
ccgctatcgggtaataagctcagccgcagcactacttctgtgacctacgaggaagcgctg
gcagcgtttgagaattctccgcgtagaaaacgtgcggtgcgtggaaactccgtatcggat
catgcgccaaaaccggaggattttaagcgtatcgacgtcaccgagggagccgaagaagac
acgtttgcaagcgaagcttctgaggagacctattcaggtagccgccgctcacgccgcgtg
gccaggaaacagggagaaacgcggaaggccgtggagaacccaacgcaatcagaggctgcg
gacgataccgagtcgacgggtaacgtgaagatagattctctacgcgggaggcgccggcgt
gccgtgcgcaggaggttccaagaaacaaatcttgctccattagtcgttgagactgcggaa
gaagaatcgacggcgaagggtcgacgccgtcggcgtgccgtgcgtaaaacggtggtgaaa
gcgccccgtaaggctgttatcggtgaggaatcttccggtgtgtacgtgaaagatgagacg
gtgccggaaacgcgcgaggcatcatctgcgggccgagggcggcgacgcgtggcgcgtcgg
gtgcgcacggcgacaaagagaaactaa
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