Comamonas odontotermitis: LAD35_02380
Help
Entry
LAD35_02380 CDS
T07833
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
codo
Comamonas odontotermitis
Pathway
codo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LAD35_02380 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
codo03021
]
LAD35_02380 (rpoC)
03400 DNA repair and recombination proteins [BR:
codo03400
]
LAD35_02380 (rpoC)
Enzymes [BR:
codo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LAD35_02380 (rpoC)
Transcription machinery [BR:
codo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LAD35_02380 (rpoC)
DNA repair and recombination proteins [BR:
codo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LAD35_02380 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UBB17523
LinkDB
All DBs
Position
520434..524666
Genome browser
AA seq
1410 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDEYDKNVEEYGDEFVAKM
GAEGIKDLLEGIEIDAEIERLRNDLTGSEVKVKKNAKRLKLLEAFKKSGIKPGWMVMEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFAQLEARGIATTIKAAKKEVETGTPVVWDILEEVIREHPIM
LNRAPTLHRLGIQAFEPILIEGKALQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYQATREKINGKGEGMVFADLGEVQRALDAGEA
ERAAKISVRLTEWSKNKATGEFEPSTKLVETTVGRALLSEILPKGMPFSTINKTLKKKEI
SKLINISFRKCGLKETVVFADKLLQNGFRLATRSGISIAIGDMLVPPQKAEIIGRAEAEV
KEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAQLAKEKVVDRHGKEVDQESFNA
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVITETDCGTHNGTLMRAVVEGGEVIESLRDRILG
RTAADEVLHPETRAVLAKAGDLLDEDLIEELEAAGVDEVKVRTALTCETRFGLCATCYGR
DLGRGGMINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGVVGFN
AAMRYVTNNKGELVVISRSGEIVIQDEYGRERERHKLPYGATLTVKPDQQIKAGTILANW
DPLTRPIITEYAGQVKFENVEEGLTVAKQVDEVTGLSTLVVIDPKHRGSAKVVRPQVKLA
DANGQEVKIPGTDHAVTIGFQVGALLQVRDGQEVGPGEVLARIPMEGQKTRDITGGLPRV
AELFEARTPKDKGALAEMTGTISYGKETKGKVRLQITDLEGKVWEELVPKERNILVHEGQ
VVNKGELIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVIEAPGDTTYIQGEQVERSEVLNTNEAAQRDGKIPATYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKDEMDEAERRA
IADAEAAELAAASEEVTASTDGAAADPAAD
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgcctgatgagcatttcgatgccatc
aagatcggtctggcttcgcccgaaaagatccgttcgtggtctttcggtgaagtgaagaag
cccgagaccatcaactaccgtaccttcaagccagagcgcgacggtctgttctgcgccaag
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgtctgaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtcacccagaccaaggtgcgccgcgaa
cgcatgggccacatcgatctggccgcgccttgcgcccacatctggttcctgaagtcgctg
ccttcgcgtctgggcctggtgctcgacatgacgctgcgtgacattgagcgcgtgctgtac
ttcgaagcgtatgtggtgaccgaccccggcatgaccccgctgaagaagttcagcatcatg
tcggaagacgaatacgacaagaacgtcgaagagtacggtgatgagttcgttgccaagatg
ggcgccgaaggtatcaaggacctgctcgaaggcatcgaaatcgatgcggaaatcgagcgt
ctgcgcaatgacctgaccggctccgaagtcaaggtcaagaagaacgccaagcgcctgaag
ctcctggaagcgttcaagaagtccggtatcaagcccggctggatggtgatggaagtgctg
cctgtgctgcctcccgatctgcgtccgctggtgccgctggacggcggccgctttgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaattcgcgtctgcgccgcctg
ctggagctgaaggctccggaaatcatcgcgcgcaacgaaaagcgcatgctgcaggaagcc
gtcgactcgctgctggacaacggccgccgtggcaaggccatgacgggcgcgaacaagcgc
gcgttgaagtcgctggctgacatgatcaagggcaagagcggccgcttccgccagaatctg
ctgggtaagcgcgtcgactactcgggtcgctcggtcattaccgtgggcccaacgctcaag
ctgcaccagtgcggtctgcccaagctgatggcgctggagctgttcaagcctttcatcttc
gcgcagctcgaagcgcgtggcattgccacgaccatcaaggccgccaagaaggaagtggaa
accggcacaccggtggtgtgggacattctggaagaggtgatccgcgagcatccgatcatg
ctcaaccgcgcacctacgctgcaccgtttgggtatccaggcgttcgagcctatcttgatt
gaaggcaaggccctgcaactgcacccgctggtctgcgcggctttcaacgccgacttcgac
ggtgaccagatggctgtgcacgttcccctgtcggtggaagcgcagatggaagcccgcacc
ctgatgctggcctccaacaacgtgctgttccccgcttcgggcgagccttcgatcgttcct
tctcaggacgtggtgctgggcctgtaccaggcgacccgcgagaagatcaacggcaagggc
gaaggcatggtgttcgcggatctgggcgaagtgcagcgcgcactggacgccggtgaagcc
gagcgcgcagccaagatcagcgtgcgtctgaccgagtggagcaagaacaaggccaccggt
gagttcgagccatcgaccaagctggtggaaaccaccgttggccgcgcactgctgtccgag
atcctgcccaagggcatgcccttctcgacgatcaacaagacgttgaagaagaaggaaatc
tccaagctgatcaacatctcgttccgcaagtgcggtctgaaggaaaccgtggtgttcgcc
gacaagctgctgcaaaacggcttccgtctggcaacgcgctccggtatctcgatcgccatc
ggcgacatgctggtgcctccgcagaaggcggaaatcatcggtcgcgccgaagccgaggtc
aaggagatcgaacagcaatacgtctcgggtctggtgacctcgggcgagcgctacaacaag
gtcgtggacatctggggcaaggccggtgacgaagtctccaaggtcatgatggctcagttg
gccaaggaaaaggtggtggaccgccatggtaaggaagtcgatcaggaatcgttcaacgcg
atttacatgatggccgactccggtgctcgtggctctgctgcccagatccgtcagctggct
ggtatgcgtggtctgatggccaagcctgatggctccatcatcgagacgccgattaccgcg
aacttccgcgaaggcctgaacgtgttgcagtacttcatctccacgcacggcgcccgtaag
ggtctggccgacacggcgttgaagaccgcaaactcgggttacctgacccgtcgtctggtg
gatgtgacgcaggatctggtcatcaccgagaccgactgcggtacgcacaacggcacgctg
atgcgcgctgtggtggaaggtggtgaagtgatcgagtcgctgcgcgaccgtatcctcggc
cgtactgcggctgacgaagtgctgcaccccgaaacccgcgcagtgctggccaaggctggc
gatctgctggacgaagacttgatcgaagagctcgaagctgctggcgtcgatgaagtgaag
gtgcgcacggcgctgacctgcgaaacgcgctttggcctgtgcgcaacctgctatggccgc
gacctgggccgtggcggcatgatcaacctcggcgaagccgtcggtgtgatcgctgcccag
tccatcggtgaaccaggcacgcagctgaccatgcgtaccttccacattggtggtgccgca
tcgcgtgctgccgtggcatcgagcgtggaagccaagtccaatggtgtggtcggcttcaac
gccgccatgcgctacgtgaccaacaacaagggcgagctggtggtgatttcgcgttcgggc
gagatcgtgatccaggacgagtatggccgcgagcgcgagcgtcacaagctgccttatggc
gcaacgctcaccgtcaagcctgatcagcagatcaaggccggtacgatcctggcgaactgg
gacccactgacccgacccatcattaccgaatacgccggccaggtgaagttcgagaatgtg
gaagaaggtctgacggtggccaagcaggtcgacgaagtgaccggtctgtccacgctggtg
gtgatcgatccgaagcaccgtggctctgccaaggtggtgcgtccacaggtcaagctggcc
gatgccaatggccaggaagtcaagatccctggtaccgaccatgcagtgacgatcggcttc
caggtcggcgctctgttgcaggtgcgtgatggccaggaagtgggccccggcgaagtgctg
gcacgtatcccgatggaaggccagaagacccgcgacattaccggtggtctgccacgcgtg
gccgagctgttcgaggcccgtacgccgaaggacaagggtgcgctggcagaaatgaccggc
accatctcctacggcaaggaaaccaagggcaaggtgcgcctgcagatcaccgatctggaa
ggcaaggtctgggaagagctggttccgaaggaacgcaacatcctggtgcacgaaggtcag
gtggtgaacaagggcgaactgatcgtcgacggtccagccgatccgcaggacatcctgcgt
ctgctgggcatcgaagagctgtcgcgctacatcgttgacgaagtgcaggatgtgtaccgt
ctgcagggtgtgaagatcaatgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtgatcgaagccccaggcgataccacctacatccagggcgagcaggtggagcgt
tccgaggtgctcaacaccaacgaagcagcgcagcgcgatggcaagatccctgcaacgtat
tcgaacgtgttgctgggtatcaccaaggcttcgctgtcgaccgactccttcatctcggcc
gcttccttccaggaaacgacccgcgtgctgaccgaggctgccatcatgggcaagcgcgac
gagttgcgtggcctgaaggaaaacgtcatcgtcggccgtctgatccccgccggtaccggt
ctggcttaccaccaggctcgcaaggccaaggacgagatggacgaggccgagcgccgcgcc
atcgccgatgcggaagctgctgagctggctgctgcgtcggaagaagtcacggcttctacc
gatggcgctgctgcagaccctgcagcggactaa
DBGET
integrated database retrieval system
