Entry |
|
Symbol |
holA
|
Name |
(GenBank) DNA polymerase III subunit delta
|
KO |
|
Organism |
codo Comamonas odontotermitis
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:codo00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LAD35_02630 (holA)
03430 Mismatch repair
LAD35_02630 (holA)
03440 Homologous recombination
LAD35_02630 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:codo03032]
LAD35_02630 (holA)
03400 DNA repair and recombination proteins [BR:codo03400]
LAD35_02630 (holA)
Enzymes [BR:codo01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LAD35_02630 (holA)
DNA replication proteins [BR:codo03032]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LAD35_02630 (holA)
DNA repair and recombination proteins [BR:codo03400]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LAD35_02630 (holA)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
577789..578844
|
AA seq |
351 aa
MQIALNQLTAQLGKGLRTLYTVHGDEALLVQEAVDAIRAAARAAGHSERNSFTVAGAHFD
WSAVLAAGGSLSLFADKQIIEVRIPSGKPGKDGSAALQQLAESSVGNDATLTIVILPRLD
KATKTGAWFAALEANGATIQVDSIERAVLPPWIAQRLQLQGQHVKSGEEGQRTLAFFADR
VEGNLLAAHQEIQKLGLLYPPGELAFEQVEQAVLNVARYDVFKLSDAVLSGQVLRTERML
SGLQAEGEAEVLVHWALAEDIRAMKRVKDALRNGRPMPMALRENRVWGNKERHFERVLPR
ISDAAVARLLHSAHAVDGIVKGLKVPEWPQDGWQALHRLALQTCKACAQGR |
NT seq |
1056 nt +upstreamnt +downstreamnt
atgcaaattgccctgaaccagttgaccgcccagctcggcaagggcctgcgcacgctctac
accgtgcatggcgatgaagccctgctggtgcaggaggccgtggatgcgatccgtgccgcc
gcccgtgcggcggggcatagcgaacgcaacagcttcaccgtggccggtgcgcattttgac
tggagcgccgtgctcgccgcaggaggcagcctctcgctcttcgcggacaagcagatcatc
gaggtccgcattcccagcggcaagccgggcaaggacggcagcgccgccttgcagcaactg
gctgaaagcagcgtgggcaatgatgccacgctcaccatcgtcatcctgcccaggctcgac
aaggcgaccaagacaggcgcctggtttgccgcattggaggccaatggcgcgaccatccag
gtggacagcatcgaacgcgcggtgctgccgccttggattgcccagcgcctgcaattgcag
ggccagcacgtcaaaagcggcgaagaaggccagcgcaccctggctttttttgccgaccgt
gtagagggcaatctgcttgccgcacaccaggaaatccagaagctgggcctgctctatcct
ccgggcgagctggcattcgagcaggtggagcaggccgtgctgaacgtggcgcgctatgac
gtgttcaagctgtcggacgccgtgctgtccggccaggtgctgcgtaccgagcgcatgctc
agtggcctgcaggctgagggcgaggccgaggtgctggtgcattgggcgctggccgaggac
attcgcgcgatgaagcgcgtcaaggacgcgttgcgcaatggccgtcccatgcccatggcg
ctgcgcgaaaaccgtgtctggggcaacaaggagcgccatttcgagcgcgtgctgccgcgc
atcagcgacgcggccgtcgcccggctgctgcattcggcccatgccgtcgatggcattgtc
aaaggcctgaaggtgcccgagtggccccaggatggctggcaggcgctgcaccgcctcgca
ttgcagacctgcaaggcctgtgcgcaggggcgctga |