Comamonas odontotermitis: LAD35_03325
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Entry
LAD35_03325 CDS
T07833
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
codo
Comamonas odontotermitis
Pathway
codo02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LAD35_03325
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
codo02022
]
LAD35_03325
02035 Bacterial motility proteins [BR:
codo02035
]
LAD35_03325
Two-component system [BR:
codo02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
LAD35_03325
Bacterial motility proteins [BR:
codo02035
]
Pilus system
Twitching motility proteins
LAD35_03325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
AAA_16
Mg_chelatase
HTH_23
AAA
PDE8A_N
HTH_50
VpsR
HTH_30
Motif
Other DBs
NCBI-ProteinID:
UBB17692
LinkDB
All DBs
Position
complement(737003..738535)
Genome browser
AA seq
510 aa
AA seq
DB search
MSFENTSVLVVDDEPDLRTLYELTLLREGYRVHTAGSVQEAQSQLQQQQFDILITDMRLP
DGLGMELLQTLRSQGRSERAIVITAYGSAENAIAALREGAFDYLTKPVDLKQFRQVVASA
RQGLPSPSPVQQAPAGDSSARSPAAATAPAKELVGQSPAMQQVRERIAKVASSMAPILVR
GESGTGKELVAQALHSHSQRAAGPMVAVNCGAIPEALLEAEFFGAKKGSYTGAAQDREGF
FQAAHGGTLFLDEIGELPLAMQAKLLRAIQERKIRPLGGQQEEAVDVRIVSATHRDLAAD
VAQGRFRQDLYYRLNVIEIVIPPLRERREDLPQLCTVLLQRIAQDHGQPAYQLTEEALAT
IAAYPLAGNVRELENLLLRSVALSDGSLLKIDQPAKAWQPDPANAAPPPAAQAAFRLPEP
SATPASLPLAVGAATAPPIPGNTYPCDQDLPQDLQTWMDELERDILVRALREFGFNRTAA
AARLGISLRQIRYRMERLHIADTHDGVPHQ
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaaatacctccgttctggtcgtggacgatgagcccgacctgcgcacgctg
tatgaactgacgctgctgcgtgagggctaccgcgtgcatacggctggctcggtgcaggaa
gcgcagtcccaattgcagcagcagcagttcgatatcctgatcaccgacatgcgactgccc
gatggcctgggcatggagctgctgcagacgctgcgcagccaggggcgcagtgagcgcgcc
atcgtcatcaccgcctatggctcggccgaaaatgccatcgccgccttgcgggaaggcgcc
ttcgactacctcaccaaaccggtcgatctcaaacaattccgccaggttgtcgcatccgcg
cgccagggcctgcccagtccctctcccgtgcaacaagcaccggcaggcgacagcagtgcc
cgatccccggcagcggcaacagctccagccaaggagctggtgggccagtcaccagccatg
cagcaggtgcgtgagcgaatcgccaaggtggccagcagcatggcgcccattctggtgcgc
ggcgaatccggtactggaaaggaactggtcgcccaggccctgcactcccacagccagcgc
gctgcgggcccgatggtggccgtcaactgcggtgcgatcccggaagcgctgctggaagcc
gaattctttggcgccaagaagggctcctacaccggcgcagcccaggaccgggaaggtttt
ttccaggccgcgcatggaggtaccctgtttcttgacgagatcggcgaactgccgctggcc
atgcaagccaaattgctgcgggcgattcaggagcgaaaaatccgccccctcggtggtcag
caggaagaagctgtcgatgtccgcatcgtcagcgccacgcaccgtgacctggcggccgat
gtggcgcaagggcgctttcgccaggacttgtactaccgactcaatgtcatcgagatcgtg
attccgcctctgcgcgagcggcgtgaggacctgcctcagttgtgcaccgtgttgctgcag
cgcattgcgcaagaccacggccagcccgcctaccagctgacggaagaggccctcgccacc
attgcggcctacccgctggctggcaatgtgcgcgagctggagaacctattgctgcgctcg
gtcgccttgagcgacggatcactgctgaaaatagaccagccagcaaaagcctggcagcca
gacccggccaatgcagccccgccacccgctgcgcaagcggcattccggttgccagaaccc
tccgcaacaccggcctctctgcctttggccgttggcgcagcaactgcgccgcccatcccc
ggcaatacctacccttgcgaccaagacctgccccaggatctgcaaacctggatggacgag
ctggagcgagacatactggtgcgggcactgcgcgaattcggcttcaaccgcacagcggcg
gcagcgcgcctgggcatcagcctgcggcaaatccgctaccggatggagcggctgcacatc
gcagatacgcatgacggagttcctcaccagtga
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