Comamonas odontotermitis: LAD35_05120
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Entry
LAD35_05120 CDS
T07833
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
codo
Comamonas odontotermitis
Pathway
codo03410
Base excision repair
codo03430
Mismatch repair
codo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LAD35_05120 (recJ)
03430 Mismatch repair
LAD35_05120 (recJ)
03440 Homologous recombination
LAD35_05120 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
codo03400
]
LAD35_05120 (recJ)
DNA repair and recombination proteins [BR:
codo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LAD35_05120 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LAD35_05120 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LAD35_05120 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UBB18020
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All DBs
Position
complement(1098428..1100203)
Genome browser
AA seq
591 aa
AA seq
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MKILARDIPPRTAWALEQAGVHPLLARLFAARGVQAAAELDDGLAQLLSPADLLGAQDAA
RLLADAIEQQARICVVADYDCDGATACAVALRGLRMLGAANVRYLVPDRVVDGYGLTPAI
AERVHQLGTDVLVTVDNGIASVDGVARAKALGLTVIVTDHHLPAATLPAADAIVNPNQPA
CGFASKSIAGVGVMFYVLMALRAELRSRGAFEDAGTPSGNNAAHAAPNAAAKRPQPRLDT
LLPLVALGTVADVVKLDANNRRLVAQGLRRIRAGQMPPGLGALFSAASRRAAAASTFDFG
FALGPRINAAGRLADMTIGIECLLTEDALRADELARQLDAINRERRDIESGMREHAMLLV
EELFEEGEEPPPAVSVFDPDFHEGVVGIVASRIKDKLHRPTFVFAASSAPGHEHELKGSG
RSIAGFHLRDALDLVAKRHPGVLIKFGGHAMAAGCTIAEEHFEVFEQALAQVAQEWLDER
TLTRQMETDGPLPAQFRRTETVDAINSQVWGQGFAPPTFSEELEVISQRLVGEKHLSLKL
RHQGEMVDGIWFGHTEPLPAKVLLAYRLDINEWQGQRKLQFLVEGAQLTAG
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctagcaagagatatcccgccacgtaccgcctgggcgctggagcaggcaggc
gtgcatccgctgctcgcccggctgtttgccgcgcgcggtgtacaggccgctgccgagctg
gacgatggtctggcccaattgctctcgcccgccgacctgcttggcgcgcaggatgccgcc
cgcctgctggccgacgccattgagcagcaggcgcgcatctgcgtggtggccgattacgac
tgcgacggtgccaccgcctgcgccgtggccctgcgcgggctgcgcatgctgggcgcggcc
aacgtgcgctacctggtgcccgaccgcgtggtggacggctacggtctcacccctgcaatc
gccgagcgggtgcaccagttgggcaccgatgtactggtgaccgtggacaacggcatcgcc
agcgtggatggcgtggcccgcgccaaggcgctgggcctgacggtgatcgtgactgaccac
cacctgcctgcagccaccctgcccgcagcggacgccatcgtcaaccccaaccagccagcc
tgcggctttgccagcaaatccatcgcaggtgtcggcgtgatgttctatgtgctgatggcc
ttgcgcgccgagttgcgcagccgtggcgcttttgaggatgcgggcactccctcgggaaac
aatgcagcgcatgcagcgccaaacgcggcggcaaaacggcctcagccccggctggacacc
ctgctgcccctggtggcactgggcacggtggccgatgtggtcaagctcgatgccaacaac
cgccgcctggtagcccagggcctgcgccgcatccgtgcgggccagatgccgccaggcctg
ggggccctgttctcggccgccagccggcgcgcggcagccgccagcacttttgatttcggc
tttgccctgggcccgcgcatcaatgccgcagggcgccttgcggatatgacgatcggcatc
gaatgcctgctgacggaggacgcattgcgcgccgacgaactggcacgccagctcgacgcc
atcaaccgcgagcgccgcgatatcgaaagcggcatgcgcgagcacgccatgctgctggtc
gaggaactgtttgaagaaggcgaggagccgcctcccgccgtcagcgtgttcgacccggat
ttccacgaaggcgtggtcggcatcgtggcgtcacgcatcaaggacaagctgcaccgcccc
accttcgtctttgccgccagcagtgcgccggggcatgagcatgagctcaaaggctcgggc
cgctcgatcgcaggttttcacctgcgcgacgcgctcgacctggttgccaagcgccacccg
ggcgtgctgatcaagtttggcggccatgccatggcggcaggctgcacgattgcagaagaa
cattttgaggtgttcgagcaggcgctggcacaggtggcgcaggagtggctggacgagcgc
acgctcacccgccagatggaaaccgacggcccgctgcccgcgcagtttcgccgtaccgag
accgtggacgcgatcaacagccaggtctggggccagggctttgcgcctccgaccttcagc
gaagagctggaggtgatcagccagcgcctggtgggcgaaaagcatctgtccctcaagctg
cgccaccagggcgaaatggtggacggcatctggttcggccataccgagcccctgcctgcc
aaggtgctgctcgcctatcgtctcgacatcaacgaatggcagggccagcgcaagctgcag
tttctggtggaaggtgcgcagttgaccgctgggtag
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