Comamonas odontotermitis: LAD35_05370
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Entry
LAD35_05370 CDS
T07833
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
codo
Comamonas odontotermitis
Pathway
codo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAD35_05370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
codo03019
]
LAD35_05370
Enzymes [BR:
codo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAD35_05370
Messenger RNA biogenesis [BR:
codo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAD35_05370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UBB18068
LinkDB
All DBs
Position
1154325..1155755
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AA seq
476 aa
AA seq
DB search
MTNSFSNLHLAEPLAKAIAEMGYASMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP
LLQRLMAHENSSASPARHPVRALVLLPTRELADQVAQQIAQFAKYTKLRSTVVFGGMDMK
PQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKKRTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFSASDDDKRRVI
IKTLRDRQVRQAFVFVNSKLGCSRLTRTLERDGLRAAALHGDKSQDERLKALEAFKQGEV
DLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTNADARH
VSDIEKLIKKKIEVEPFELDERPRGRFNDGHRDRRERESRDQRGRERDDETSDRRERYRP
APVSRDPFFDKPYEAKAAEPAAWDAGSKPAPARGAASVKPRRKVAALFKPAPTTES
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgacaaattctttctccaaccttcatctggccgagcccttggccaaggccatcgccgag
atgggctatgcatccatgacgccgatccaggcacaggccattcctgtggtgctgaccggc
aaggatgtcatgggcgcagcgcagactggtaccggtaagacggctgccttttcattgccg
ttgctgcagcgcttgatggcgcatgaaaacagctcggcatcgcctgcccgccacccggtg
cgcgccctggtgctgctgcccacgcgcgagctggccgatcaggtggcccagcagattgcc
cagtttgccaaatacaccaagctgcgcagcacggtggtgttcggcggcatggacatgaag
ccccagactatcgagctgaagaagggtgtggaggtgctggtggccacaccgggtcgcctg
ctcgaccatatcgaggccaagaacgccgtcctcaatcaggtggaatatgtggtgctggac
gaggctgaccgcatgctcgacatcggctttctgcccgatctgcagcgcatcctgtcgtat
ttgcccaagaagcgcaccaccttgctcttctcggccacgttctcgcccgagatcaagcgg
ctggccggcagctacctgcaagatccgatcacgatcgaagtcgcccgtcccaatgagacg
gcttccaccgtcgagcagcgctttttcagcgcctccgacgatgacaagcgccgcgtgatc
atcaagaccctgcgtgatcgccaggttcgccaggcctttgtattcgtcaacagcaagctg
ggctgctcgcgcctgacgcgcactctggagcgtgacggtctgcgtgccgcagcactgcat
ggcgacaagagccaggacgaacgtctgaaggcgctcgaagccttcaagcaaggcgaagtc
gatctgctggtgtgcaccgatgtggctgcgcgcggactggacatcaaggatgtgcctgcc
gtcttcaactacgacgtgcctttcaatgccgaagactatgtgcaccgcattgggcgaacg
ggccgtgcgggcgcttcaggtctggccgtgactctggtcaccaatgccgacgcgcgccac
gtgagcgacattgaaaagctgatcaagaagaagatcgaggtcgaacccttcgagctggat
gagcggccacgcggccgcttcaacgacggccaccgggaccgccgcgagcgtgaaagccgc
gatcaacgtggccgcgagcgcgacgacgaaacatcggaccgccgggagcgctatcgcccg
gcacccgtgtcgcgcgatccgttctttgacaagccctacgaggcgaaagctgccgagccc
gcagcctgggatgcgggctccaagcccgcacctgcacggggcgctgccagcgtcaagcca
cgtcgcaaggtggcggcgctcttcaagcccgcacccacgaccgagtcgtga
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