Comamonas odontotermitis: LAD35_05460
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Entry
LAD35_05460 CDS
T07833
Symbol
rtcR
Name
(GenBank) RNA repair transcriptional activator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
codo
Comamonas odontotermitis
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
codo03000
]
LAD35_05460 (rtcR)
Transcription factors [BR:
codo03000
]
Prokaryotic type
Other transcription factors
Others
LAD35_05460 (rtcR)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
Mg_chelatase
AAA
AAA_16
AAA_22
AAA_2
NACHT
MCM
AAA_30
AAA_14
BrxC_BrxD
AAA_7
TniB
AAA_33
Methyltransf_32
ATPase_2
ResIII
TsaE
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
UBB18086
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All DBs
Position
complement(1178672..1180288)
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AA seq
538 aa
AA seq
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MKSITVIGFLGTQLDSGRGAGRWSKWRPSVAITQHEDMVVARMELLYTRSHIDLARLVQA
DIAAVSPETEVHLVELPIHDPWDFQQVYGALYDWAQSYQFDSDSAQYWLNITTGTHVAQI
CLFLLAESRAMPGVILQASPPKRQVDGAAGNYTLIDLDLSRYDAIATRHARASEDGVAFL
KSHIATRNQRFNRLIEEIEQVAGRSQAPMLLVGPTGAGKSFLARRMYELKKARHQVSGAF
VEVNCATLRGDSAASTLFGHKKGAFTGAATERAGLLRTADHGVLFLDEIGELGADEQAML
LMAIEEKRFYPMGSDREVNSDFQLIAGTNRDLRLEVSAGRFREDLFARINLWTYNLPGLA
QRAEDIEPNIDHLLALHAQQTHRTERFNAEARKRYLQFAQSPAALWSGNFRDLHASVTRL
ATLSHSGRITEDQVEAEIGRLQWLWQRPDALQPSNDDPAEVALEDVLPADAIAAMDLFDR
MQLASVVRVCRGASSLSDAGRQLFQASRAQRSVVNDADRLRKYLQKFGLSWDVIVGVR
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccatcaccgtcatcggctttctgggtacccagctggacagcgggcgcggcgct
ggccgctggagcaagtggcgcccgtcggtcgcgatcacacagcatgaagacatggtggtg
gcgcgaatggagttgctgtatacgcgatcgcacatcgacctggcacggctggtgcaggct
gatatcgcggctgtgagccccgagaccgaggtgcatctggtggagctgcccattcatgat
ccctgggattttcagcaggtatatggcgccctttatgactgggctcaaagctatcaattt
gatagcgattccgcgcaatactggctcaacatcaccaccggtacgcatgtggcgcagatc
tgcctgttcctgctggccgaatcacgcgccatgccgggcgtcatcctgcaggcctcgccc
cccaagcgccaggtggatggcgctgcgggcaactacacgctcatcgatctggatctgtcg
cgctacgacgccattgccacgcgccacgcacgggccagcgaagacggcgtggcctttctc
aaaagccatatcgccacacgcaaccagcgtttcaaccggctgatcgaagagatcgaacag
gtggcgggccgctcgcaggcacccatgctgctggtgggacccaccggcgcgggcaagtcg
ttccttgcgcggcgcatgtatgaactgaagaaggcgcgccaccaggtgagcggcgccttt
gtggaagtgaactgcgccaccttgcgcggcgacagcgccgccagcacgctgtttggccac
aaaaagggcgccttcaccggcgccgctaccgagcgtgccggcctgctgcgcaccgccgac
catggcgttctctttctcgacgaaatcggcgagctgggcgcggacgagcaagccatgctg
ctgatggcgattgaggaaaagcgcttctaccccatggggtcggaccgcgaggtgaacagt
gactttcagctgattgccggcaccaatcgcgatctgcggctggaggtgagcgctggccgg
tttcgcgaagacctgtttgcccgcatcaacctgtggacctacaacctgcccggcctggcc
cagcgcgctgaagacatcgaacccaatatcgaccatctgctggccctgcacgcgcagcag
acccaccgcaccgagcgcttcaacgccgaggcacgcaagcgctatctgcagtttgcgcaa
agcccggcggccttgtggagcggcaacttccgcgacctgcacgccagcgtgacacgcctg
gccaccttgtctcacagtggccgtatcaccgaggatcaggttgaggccgagattggccgg
ttgcagtggttgtggcagcggcccgatgcactgcagccatcgaatgatgaccctgcagag
gtggcgctggaggatgtattgcccgccgatgcgattgctgcgatggatctgtttgaccgg
atgcagctggcgtctgtcgtacgtgtttgccgcggtgccagcagcttgtcggatgctggg
cgccaactttttcaagcctcgcgggcgcagcggagcgtggtgaatgatgcggatcggttg
cgcaagtatttgcagaagtttgggctcagttgggatgtgattgtgggggtgcgctaa
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