Comamonas odontotermitis: LAD35_05465
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Entry
LAD35_05465 CDS
T07833
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
codo
Comamonas odontotermitis
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
codo03016
]
LAD35_05465
Enzymes [BR:
codo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LAD35_05465
Transfer RNA biogenesis [BR:
codo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LAD35_05465
Prokaryotic type
tRNA splicing ligases
LAD35_05465
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UBB18087
LinkDB
All DBs
Position
1180573..1181790
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AA seq
405 aa
AA seq
DB search
MTYQQMQVPNGVPIKMWTNGVPVEPEAQNQLANISRLPVVFKHVAVMPDVHLGIGATIGS
VVPTIKAIIPAAVGVDLGCGMMACKTTLTASDLPDNLAPIRAAIERAVPVGMTPKRYGRD
KGSWETPPEETDAAWTVLVKEFEEICEAHPRIKNTNNYKHLGTLGTGNHFIEVCLDENQS
VWIMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDQDLAYFEEGAAYFGDYVKAVGWA
QKFARANREVMMIRVINALKKVITKPFETHLEAVNCHHNYVQRETHFGEEVFVTRKGAVS
ARAGELGIIPGSMGAKSFIVRGKGNPESFNSCSHGAGRTMSRNKAKKLFTVEDQVRATEG
VECRKDADVIDEIPMAYKDIDAVMAAQNDLVEVVYTLKQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgacctaccaacaaatgcaagtgcccaacggcgtgccgatcaagatgtggaccaacggc
gtgcccgtggagccagaggcccaaaaccagctggccaacatctcgcgtctgcccgtcgtg
ttcaagcacgtggcggtgatgcccgatgtgcacctgggtatcggcgccaccattggttcg
gtggtacccaccatcaaggccatcattccggcggccgtcggtgtggacctgggatgcgga
atgatggcctgcaagaccacgctgaccgcgagcgacctgccggacaacctggcacccatt
cgcgctgccatcgagcgtgccgtgcccgtgggcatgacgcccaagcgctacggccgcgac
aaggggagctgggagacgccgcctgaggaaaccgatgccgcctggacggttctcgtcaag
gagttcgaggaaatctgcgaggcgcacccgcgcatcaagaacaccaacaactacaagcat
ctgggaacgctgggtaccggcaaccacttcattgaagtgtgcctggatgaaaaccagtcg
gtgtggatcatgctgcattcgggttcgcgcggggtgggtaacgccatcggcacccacttc
atcgagttggcgaaaaaggatgccgagctgcaccagcgcaacctgcctgaccaggatctg
gcgtacttcgaagaaggcgccgcttactttggtgactatgtgaaggcggtcggttgggcg
cagaagtttgcgcgcgccaaccgcgaggtgatgatgatccgcgtgatcaacgcgctcaag
aaggtgatcaccaagccgttcgaaacgcacttggaagcggtgaactgccaccacaactac
gtgcaacgcgaaacgcactttggcgaagaggtgtttgtaacccgcaagggcgcggtgagt
gcgcgggccggtgagctgggcatcattcccggaagcatgggcgccaagagcttcatcgtg
cgtggaaaggggaaccccgaaagcttcaacagctgcagccatggtgcgggccgcaccatg
agccgtaacaaggccaagaagttgttcaccgtggaagaccaggtgcgagccaccgaaggc
gtggaatgccgaaaggacgccgacgtgatcgacgagatcccgatggcctacaaggatatc
gacgcggtgatggctgcacagaacgacctggtggaagtggtgtacacgctcaaacaggtg
gtgtgtgtgaaggggtga
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