Comamonas odontotermitis: LAD35_05765
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Entry
LAD35_05765 CDS
T07833
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
codo
Comamonas odontotermitis
Pathway
codo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAD35_05765 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
codo03019
]
LAD35_05765 (pcnB)
Enzymes [BR:
codo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LAD35_05765 (pcnB)
Messenger RNA biogenesis [BR:
codo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LAD35_05765 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Slu7
VTC
DUF2204
Motif
Other DBs
NCBI-ProteinID:
UBB18144
LinkDB
All DBs
Position
1248594..1250177
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AA seq
527 aa
AA seq
DB search
MIKNIIDKLLGKSAAVGKAKNPFGKREEVPVEVHHIDPKLVDRRAVDVCSTLKEAGFEAY
IVGGAVRDLLLGLRPKDFDVATNATPEQVKNLFRRAFIIGRRFRIVHVVYGRGRENEVIE
VTTFRAFLDSSKAEQVQGNEKTSKAALAGMKLAVDESGRVLRDNVWGPQNEDAARRDFTV
NAMYYDPQTQIVVDYHKGIRDAQKLVLRMIGDPATRYREDPVRIIRAVRFAAKLSKKGFT
IDPKTAKPLVECAQLLQEVPQSRMFDEMLKLLQTGHALASVEQLRKLGLAKGIYPLLDVV
VDRADLPFVQAALMDTDRRVAEGKSVAPSFLLACVLWQDVKAGWDARLDRGEHPFPALQD
AIDEVFNLRIGDVSGRGKLAADMREIWVMQPRFEKRTGSTPFGMIAQVRFRAGFDFLRLR
ADVDEVDEMLANWWQEFQQADEARREDLIAQVREEQRAKQKGATGAKRGAKKPASKAPVE
SSDASALQAVAQQALNDGETLDAPAKKRRRRRRKPGGAGQGNSGAGE
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaacatcattgacaaactgctgggcaagagcgctgccgtcggcaaggccaag
aacccattcggcaagcgcgaggaagtgcctgtcgaggtgcaccatatcgatcccaagctg
gtggaccggcgcgccgttgatgtctgcagcaccttgaaggaagctgggtttgaggcttat
atcgtcggcggcgccgtgcgcgatctgctgctgggtctgcgccccaaggatttcgacgtg
gccaccaacgccacgcccgagcaggtcaagaacctgtttcgccgcgccttcatcattggg
cggcgctttcgcatcgtgcacgtggtttacggtcgcggccgcgagaatgaagtcatcgaa
gtcaccaccttccgcgccttcctcgacagctccaaggccgagcaggtgcagggcaacgaa
aaaaccagcaaggccgcccttgccggcatgaagctggcggtggacgaaagtggccgcgtg
ctgcgcgacaacgtctggggtccgcagaacgaggacgcggcgcgccgcgacttcaccgtc
aacgccatgtactacgatccgcagacgcagatcgtggtggattaccacaagggcatccgc
gatgcgcaaaagctcgtgctgcgcatgatcggcgacccggccacgcgctaccgcgaagac
ccggtgcgcatcatccgtgccgtgcgctttgccgccaagctcagcaagaaaggcttcacc
atcgaccccaagacggccaagccgctggtcgagtgcgcgcagctgctgcaggaagtgccc
cagagccgcatgttcgatgagatgctcaagctgctgcagaccggccatgcgctcgcgtcg
gtcgagcagttgcgcaagctgggcctggccaagggcatctatcctctgctggacgtggtg
gtagatcgtgccgatctgccctttgtgcaggctgcgctgatggacaccgaccgccgcgtg
gccgaaggcaagagcgtggcgccgagcttcttgctcgcctgcgtgctgtggcaggacgtg
aaggcaggctgggatgcgcgcctggatcggggcgagcacccgttcccggccctgcaggat
gcgattgacgaggtgttcaacctgcgcattggcgatgtgtcagggcgcggcaagctggcc
gccgacatgcgcgagatctgggtgatgcagccgcgctttgaaaagcgcacgggcagcacg
ccgttcggcatgatcgcccaggtgcgtttccgtgcgggctttgacttcctgcgcctgcgt
gccgatgtggacgaggtggacgagatgctggccaactggtggcaggagttccagcaggcc
gacgaggcacgccgggaagacctgatcgcccaggtgcgcgaagagcagcgtgccaaacaa
aagggcgccacaggtgccaagcggggtgccaaaaagccggccagcaaggccccggtggag
agctcggacgccagcgcgctgcaggccgtagcccagcaggcactgaatgacggggaaaca
ttggatgcacccgccaagaagcgccgccgccgccgtcgcaagcccggaggcgcagggcag
ggcaacagcggtgcgggtgagtga
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