Comamonas odontotermitis: LAD35_07090
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Entry
LAD35_07090 CDS
T07833
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
codo
Comamonas odontotermitis
Pathway
codo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAD35_07090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
codo03019
]
LAD35_07090
Enzymes [BR:
codo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAD35_07090
Messenger RNA biogenesis [BR:
codo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAD35_07090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
UBB18395
LinkDB
All DBs
Position
complement(1504060..1505832)
Genome browser
AA seq
590 aa
AA seq
DB search
MTFEELNLAPAIVQAVREQGYDAPTPIQAQAIPVVLQGGDLLAGAQTGTGKTAAFTLPLL
HRLTQSEGSRNKWGGKAIRALILAPTRELAAQVEENVRHYATHLDIQSTVIFGGVGMKPQ
IDRIKKGIDVLVATPGRLLDLQQQGFLDLSTVEILVLDEADRMLDMGFIHDVKKVLALVP
KDKQSLLFSATFSDEIRELANGLLKNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLH
IIQENNWSQVLVFTRTKFGANNVADFLTKNGVSAMALHGNKSQSARTQALEGFKTGDLRA
LVATDIAARGIDIDELPNVVNYEIPNVSEDYVHRIGRTGRAGREGNAVSLVCMDEEGFMM
DIERFTKQEIPVQVIDGFGPEEGEKAEPIAMGRQTIWGGAGKPPSRDVMQAAAKAARQEM
MERIRTTKSTRGTGTAGNANGGQRNAKRGAAPRAEANGEFEPAGAEQPRRDQRPPRRDAN
RQGPRGSGEARRPGGQGAQPRHPQGANPRHSGPRAPRQDERQPRADAHLGTQFGGTVDGR
DHRRSGAAQPDPMRTSVDSMAERGRRGGFGGGNRNGGNGGRGNRNHSFSR
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaactgaatctggcaccagccattgtgcaggctgtgcgcgagcagggc
tatgacgcccctacccccatccaggcccaggccattcccgtggtgctccaaggtggagac
ctgttggccggtgcacagaccggcaccggcaagaccgcagcgttcacgctgcccttgctg
caccgcctcacccaatccgaaggtagccgcaacaaatggggcggcaaggccatccgcgcg
ctgatcctggcgcccacccgcgagctggcagcccaggtggaagagaacgtgcgccactat
gcaacgcatctggacatccaatccaccgtcatctttggcggcgttggcatgaagccacag
atcgaccgcatcaaaaaaggtatcgacgtactggtggccacgcctggccgtctgctggat
ctgcagcagcaaggctttctggacctgtccaccgtggaaatcctggtgctggacgaagcc
gaccgcatgctggacatgggcttcatccacgatgtgaagaaggtgctggccctggtgccc
aaggacaagcagagcctgctgttctccgccaccttcagcgacgagatccgcgaactggcc
aatggcctgctgaagaacccgcagtccatccaggtcaccccgcgcaacaccacggtgcag
cgcatcaagcaggtgatccaccctgtgggccgcggcaagaaaaagcaggtgctgctgcac
atcatccaggaaaacaactggagccaggtgctggtgttcacgcgcaccaagtttggcgcc
aacaatgtggctgattttctgaccaagaatggcgtctctgccatggccctgcacggcaac
aagagccaaagcgcacgcacccaggccctcgaaggcttcaagacgggtgatctgcgcgcc
ctggtcgcgactgacattgcagcacgcggcatcgacatcgacgagctgcccaacgtggtg
aactacgagatccccaatgtctcggaagactacgtgcaccgcatcggccgcacgggccgc
gccggtcgcgaaggcaatgccgtgagcctggtgtgcatggatgaagaaggcttcatgatg
gacatcgagcgcttcaccaagcaggaaatcccggtgcaggtgatcgacggctttggccct
gaagaaggcgaaaaggccgaacccatcgccatgggccggcaaaccatctggggcggtgcc
ggcaagccaccaagccgtgatgtgatgcaagcggctgccaaggctgcgcgccaggaaatg
atggagcgcatccgcacgaccaagtcgacccgcggcacgggcaccgcaggcaatgccaat
ggcggccaacgcaacgccaagcgcggtgcggcccctcgcgcagaagccaacggcgaattc
gagcccgcaggcgcagagcagcctcgccgcgaccagcgccctccacgccgtgatgccaac
cgccagggcccgcgcggctccggagaggcacgtcggccaggtggccaaggtgcacagccg
cgccacccacagggtgccaatccgcgccacagcggcccgcgcgctccacgccaggatgag
cgccagccccgcgccgatgcccatctgggtacccagtttggtggcaccgtggatggccgc
gatcaccgccgcagcggcgctgcgcaacccgaccccatgcgcaccagcgtagacagcatg
gccgaacgcggccgtcgtggcggctttggcggcggcaatcgcaatggcggcaatggtggg
cgaggaaatcgtaaccattcgttttcaagataa
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