Comamonas odontotermitis: LAD35_07115
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Entry
LAD35_07115 CDS
T07833
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
codo
Comamonas odontotermitis
Pathway
codo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LAD35_07115 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
codo03400
]
LAD35_07115 (recB)
Enzymes [BR:
codo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LAD35_07115 (recB)
DNA repair and recombination proteins [BR:
codo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LAD35_07115 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
ResIII
AAA_12
Motif
Other DBs
NCBI-ProteinID:
UBB18400
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All DBs
Position
1515130..1519053
Genome browser
AA seq
1307 aa
AA seq
DB search
MSGQGSVPQGLADAVQALHPLQFPLWGSRLIEASAGTGKTYTIAALYLRLVLQHGAGNAY
GRPLVPPEILVVTFTDAATQELRDRIRQRLAEAAELFGRNPADTIGLDAVDPLLLALRAD
YPDAQWPGCARRLREAANWMDEAAVSTIHSWCYRMLREHAFDSGSLFQQQLVTDQTELLT
QVVQDYWRTQFYGLPASALRSLQTVVASPAALQDALQGMLARQEAEWQFEGQALPASAEV
DVAALLNQAAEQTERCEQLQAVARDAWRAHRADLEQLFATLLPHFNGTTYPKKDEEGVFD
GWMAGMAAWSEGADAPAKIRAFSQSGIRLKKGANVPTHTALAALDDWLAADGEALPAAAQ
IKPLLLRHALGHVRRALNAEKQRRAELGFDDLLQRLDAALQAEGGEALAARIRAQFPVAM
IDEFQDTDPLQYRIFERVYAIDANDAALGFFMIGDPKQAIYAFRGADIYTYLRARAATAG
RHYSLGTNYRSTTAVVDAVNHCFAHAEGHDSGAFRFRQGAANPVPFVPVGANGRRDGLFL
EGATQPAMTLWTVLAPEREADGEGAEGAGGAEDAAASAASSRTGVPEGQYRRRMAASAAA
QITEWLNAAQRGQAGFGTGPDALQRALRPADIAVLVRGRAEAELVRDQLALRGLASVYLS
DRDSVFQTAEAADMLRWLRAVHAPSDDGLLRAALATAAMGWSWQALDRLNHDEQHWEQLA
LRMRALQQLWQKKGVLPMLRQWLLDFDLPARWLSQAGGERRLTNVLHLAEWLQRTSAAVD
GEQALMRALAEQMARPEGDEEILHLESDADLIKIVTIHKSKGLEYPLVLLPFISSWRDFD
GKSRGYAQFHDAATGALVVELSNRHAPAVAGHNDERLSEDMRLLYVALTRAQYALWLGIA
PIAKGSSKAGTLEKSAVGYLLAGGNKLPDATLGATLQAFAQGCTGMAVQPLPPATSPDAV
RYTPPPAPALHAPRQPQRRYDEHWWIASFSALTDKLGPVGAVGPVGDVAGLAPQPVDAID
FDALAQDGRVPEPETAQEDQYLELQDVAPDTPGATLPVRPAAAEPGSLHAFPKGPDAGNF
LHGMLEWCAQEGFGTVLAQPAQLDSLIAHRCKVRGWADWAEPLQGIVRQWLQAPLVLQGE
AGPSLAQLAQWQVEMEFWLPVVGQASSAQLDALVQQHIAPGQPRPALAYNRLHGMLKGYM
DLVLEHGGRYYVLDYKSNWLGTDSTAYTPAAMQAAVLQHRYDVQYVIYTYALHRLLQLRL
PGYDYERDVGGVVYWFLRGVDAAGAGMYADKPPRALMDALDALWAAP
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcagggcagcgtgccgcaaggcctggcagacgcggtgcaggcgctgcacccc
ctgcagtttccgctgtggggcagccgcctgatcgaggcgagcgcgggcacgggcaaaacc
tacaccattgcggccctctacctgcggctggtgctgcagcatggcgcaggcaatgcctat
ggccgcccgctggtgccgccagaaatcctggtggtcaccttcaccgacgctgcgacccag
gagctgcgcgaccgcattcgccagcgcctggccgaggcagctgagttgtttggccgcaac
ccggcagacaccatcgggctggatgcggtcgatcccttgctgctggcgctgcgtgcagac
taccccgacgcccaatggcccggctgcgcccgccgcttgcgtgaagccgccaactggatg
gacgaggccgccgtctccaccatccacagctggtgctaccgcatgctgcgcgaacatgcc
tttgacagcggcagcctgttccagcagcaactggtgaccgaccagaccgagctgctcacc
caggtcgtgcaggattactggcgcacccagttctacggcctgcctgccagcgcgttgcgc
agcctgcagaccgtggtggcttcccccgcggcgctgcaagatgcgctgcaaggcatgctg
gcgcggcaggaggccgagtggcagttcgagggccaggcgctgccagcatctgcggaggtg
gatgttgcggcgctcctgaaccaggctgccgagcagaccgagcgctgcgagcagctgcag
gcagtcgctcgtgatgcctggcgtgcccaccgcgccgatctggagcaactctttgccacg
ctgctgccgcacttcaatggcaccacctaccccaagaaagacgaagagggcgtgttcgac
ggctggatggccggcatggccgcatggagcgaaggggccgatgcacccgcaaagatccgc
gccttcagccagtcgggcattcgcctgaaaaagggcgccaatgtacccacgcacaccgcg
ctggcagcgctggacgactggctggctgccgacggcgaagccttgccagccgcagcgcag
atcaagccgcttttgctgcgccatgcgctgggccacgtcaggcgtgcgctgaacgccgaa
aagcagcgccgagccgagctgggttttgacgacctgctgcaacgcctggacgccgccttg
caggccgaaggaggcgaggcgctggcagcacgcatccgcgcgcagtttccggtggcgatg
atcgatgagtttcaggacaccgacccgctgcagtaccgcatcttcgagcgggtgtatgcc
atcgacgccaacgacgccgctctgggttttttcatgattggcgaccccaagcaggcgatc
tatgcgtttcgtggtgcagatatctacacctacctgcgcgcccgtgcggcaacggccggg
cgccactattcgctgggcaccaactaccgctccaccacggcggtggtcgacgccgtcaac
cactgctttgcccatgccgaggggcatgacagcggtgcattccgctttcgccagggcgca
gccaacccggtaccgtttgtacccgtgggcgccaatggccgcagggatggcttgtttctg
gaaggagccacccagcccgccatgacgctgtggaccgtgctggcaccggagcgggaagcg
gatggcgaaggcgcggagggggcaggcggtgcagaggatgccgccgccagtgccgcatcc
tcacgcaccggcgtgcccgaaggccagtaccgccgccgcatggcagcgtctgcggctgcg
cagatcaccgaatggctcaatgccgcgcaacgcggacaggccgggtttggcaccggcccc
gatgccctgcagcgggcgctgcgcccggccgatatcgccgtgctggtgcgcggccgtgcc
gaggctgagctggtgcgcgatcagctcgcgctgcgcggcttggccagcgtctacctgtcc
gaccgcgattcggtcttccagactgcagaagccgccgacatgctgcgctggctgcgcgcg
gtgcatgcgccgtctgatgacggcctgctgcgcgcggccctcgccaccgccgccatgggc
tggtcgtggcaggcgctggaccggctcaaccacgacgaacaacactgggagcaactggcc
ctgcgcatgcgcgcgctgcagcagctgtggcagaaaaagggcgtgctgcccatgctgcgc
cagtggctgctcgattttgacctgcccgcgcgctggctgtcgcaggccggaggcgagcgc
cgcctcaccaatgtgctgcacctggccgaatggctgcagcgcacctcggccgccgtcgat
ggcgagcaggcgctgatgcgcgccctggccgagcagatggcgcggcccgagggcgacgag
gaaatcctgcacctggaaagcgatgccgatctgatcaagatcgtcactatccacaaatcc
aaaggcctggagtacccgctggtgctgctgccattcatcagcagctggcgcgatttcgat
ggcaagagccggggctatgcccagtttcacgacgcggccacgggcgccctggtggtggag
ctgagcaacaggcacgcgcccgccgtggcgggccacaacgacgaacgcctcagcgaagac
atgcgcctgctgtacgtggcgctcacgcgcgcgcagtacgcgctgtggctgggcattgcg
cccatcgccaagggcagcagcaaggccggtacgctggagaaaagcgccgtcggctacctg
ctggcgggcggcaacaagctgccggatgcgacgctgggtgccaccttgcaggcgtttgcc
caaggctgcacaggcatggccgtgcagccgctgccaccagcaaccagcccggacgctgtg
cgctacacaccgccgccggcccccgcactgcatgcgccgcgccaaccgcagcgtcgctac
gacgaacactggtggatcgccagtttctcggcgctgaccgacaagctcggccctgttgga
gcggttggccctgttggcgacgtggcaggcctggccccgcagccagtggatgctattgat
tttgatgccttggcgcaggatggacgggtgccagagcccgaaacggcccaggaagaccag
tacctggagctgcaggacgtggcccccgatacgccaggcgctacgctgcccgtgcgtcca
gccgctgccgagcccggcagcctgcacgccttccccaaggggccggatgccggtaatttt
ctgcacggcatgctggaatggtgcgcgcaggaaggctttggcaccgtactggcgcagcct
gcgcaactcgacagcctcattgcccaccgctgcaaggtgcgtggctgggccgactgggcc
gagccgctgcagggcatcgtgcgccaatggttgcaggcgccgctggtgctgcagggtgaa
gccgggccttcgctggcccaactggcgcagtggcaggtcgagatggaattctggctgccc
gtggtgggccaggcatcgtctgcccagctcgatgcgctggtgcagcagcacattgcgccc
ggccagccccggcctgcgctcgcttacaaccggctccatggcatgctcaagggctacatg
gacctggtgctggagcacggcggtcgctactacgtgctcgactacaaatcgaactggctg
ggcacggacagcacggcctatacacctgctgccatgcaggctgcagtgctccagcaccgt
tacgatgtgcagtatgtgatctacacctatgcgctgcaccgcctgttgcagctgcgcctg
cctggttacgattacgagcgcgatgtgggtggcgtggtgtactggtttctgcggggcgtg
gatgctgcgggcgccggcatgtatgccgacaagccgccgcgcgcgctgatggatgcgctc
gatgccctgtgggcggcgccgtga
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