Comamonas odontotermitis: LAD35_07130
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Entry
LAD35_07130 CDS
T07833
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
codo
Comamonas odontotermitis
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
codo03009
]
LAD35_07130 (rlmD)
Enzymes [BR:
codo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LAD35_07130 (rlmD)
Ribosome biogenesis [BR:
codo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LAD35_07130 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_25
Methyltransf_23
TRAM
MTS
Motif
Other DBs
NCBI-ProteinID:
UBB18403
LinkDB
All DBs
Position
1522421..1523941
Genome browser
AA seq
506 aa
AA seq
DB search
MAAGIAASEAAQFPADALCITSMDMDAQGVARRADGKVVFVDGALPTEWVSAKTRRKKNN
WEQADLLQIHRESSQRVRPGCPHFGLHAGACGGCKMQHMHVSGQIAIKQRVLEDNLWHLG
KVVPETVMRPIEGPSWGYRFRARLSVRYVAKKGKVLVGFHERKSRYIADMETCKVLPPHV
DALLMPMRELIASMDARETCPQIEVACGDEVTALVLRHLEPLSDADQQRLRDFAAAHNVQ
WWLQPKGPDTVRLMDEGGTQLSYGLPDFGITMPFKPTDFTQVNPHINRVLVTRALRLLDA
KKTERVIDWFCGLGNFTLPIATMAREVLGIEGSDTLVQRSHENYAANNAARPAGQALAAT
SFVARNLFEMTPEMLVADGQADKWLVDPPREGAFALSKALADIHKARHQVPDAPVLPTSA
KEWTPPRRIVYVSCNPATLARDAGLLVHQGGYRCVAAGVVNMFPHTAHVESMAVFEWDGH
PPSVKTDAEADLAALAAESENNLMDA
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggcagccggcattgccgccagcgaagctgcgcaatttcctgcagatgccctgtgcatc
acctccatggacatggacgcccaaggcgtggcgcgccgcgccgacggcaaggtcgtgttt
gtcgacggtgccttgcctaccgaatgggtcagtgccaagacccgccgcaagaaaaacaac
tgggagcaggccgatctgctgcagatccaccgtgaatcctcgcagcgcgtgcgccccggc
tgcccccactttggcctgcatgccggcgcctgcggcggctgcaagatgcagcacatgcac
gtaagcgggcagatcgccatcaagcagcgggtgctggaggacaacctctggcacctgggc
aaggtggtgcccgagaccgtgatgcgccccatcgaaggcccgagctggggctaccgcttc
cgggcgcgcctgtcggtgcgctatgtggccaagaagggcaaggtgctggtgggctttcat
gagcgcaagagccgctacatcgccgacatggaaacctgcaaggtgctgccgccccatgtc
gatgctctgctgatgcccatgcgcgagctgatcgccagcatggatgcgcgcgagacctgc
ccgcagattgaggtggcctgcggcgatgaggtgaccgcgctggtgctgcgccacctggag
ccgctgtccgatgccgaccagcagcgcctgcgcgattttgccgctgcccacaacgtgcaa
tggtggttgcagcccaaggggccggacaccgtgcgcctgatggacgagggcggcacgcag
ctgtcgtacggtctgcccgatttcggcatcaccatgcctttcaagccgaccgacttcacc
caggtcaacccgcacatcaaccgcgtgctggtcacccgcgcgctgcgcctcttggatgcg
aagaagaccgagcgtgtgatcgactggttctgcggcctgggcaacttcacgctgccgatt
gccaccatggcgcgcgaagtgctcggtatcgagggatcggacacgctggtacagcgctcg
catgagaactacgcggccaacaatgctgcaaggccagctggtcaggcgcttgctgctact
agctttgtagcgcgcaacctgttcgagatgacgcccgagatgctggtggccgatggccag
gctgacaaatggctggttgatccgccacgcgaaggcgcgtttgctctctccaaggcactg
gcggacatccacaaggcgcgtcaccaggtgcccgatgcgcctgtgctgcccacatctgcc
aaggaatggacgccgccccgccgcattgtctatgtcagctgcaacccggccacgctcgcg
cgtgatgcggggctgctggtgcaccagggcggttaccgttgcgtggcagcgggcgtggtc
aacatgttcccgcatacggcccacgtcgagagcatggccgtcttcgaatgggacggccac
ccgccctccgtcaagacagacgcagaggcagacctggccgcgctggctgcagagagcgaa
aacaacctcatggatgcctga
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