| Entry |
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| Symbol |
hrpA
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| Name |
(GenBank) ATP-dependent RNA helicase HrpA
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| KO |
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| Organism |
codo Comamonas odontotermitis
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| Brite |
KEGG Orthology (KO) [BR:codo00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:codo03019]
LAD35_07540 (hrpA)
Enzymes [BR:codo01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LAD35_07540 (hrpA)
Messenger RNA biogenesis [BR:codo03019]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LAD35_07540 (hrpA)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1608251..1612402
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| AA seq |
1383 aa
MSLQITFPESLPVSARREEIMEAMERHQVIIVCGETGSGKTTQLPKIALALGRGKLNATP
SDKWPPRSSAARDSLPPEGAPSILGRPGDGKGEVRGHLIGHTQPRRIAASSVAKRIAEEL
NTPLGEVVGYKVRFQDRLSKDASVKLMTDGILLAETQTDPLLRQYDTLIIDEAHERSLNI
DFLLGYIRQILPKRPDLKVVVTSATIDADRFAKHFESKSGPAPVIMVSGRTYPVEMRYRP
FEDAKDYDLNDAIADGVDELWQGGSGGDILIFLPGEREIREAADHLRKHLQHSPVLRNAE
VLPLFSRLSQAEQDRIFEGHTGRRIVLATNVAETSLTVPGIRYVIDAGTARVKRYSFRSK
VEQLLVEPISQAAANQRAGRCGRVANGICIRLYDEADFNSRARFTDPEILRSSLAGVILR
MKALRLGDVVHFPFLEAPSGRAIADGYQLLQELGAVDDQGELLPMGKELSRLPLDPRVAR
MIVEARERGALAEVLVIAAALSVQDVRDRPLEAQQQADQQHAKFDDEKSEFSGYLRLWKW
LADARGGKVVAKTRKEMAAQAAPVKGLANLRNAAFLPVAQRSSGATAVAQTQQAPLAAFT
PQDAVADEATHKLSNRQWEQLLRQNCINIRRVREWRDIHSQLLTVVNEQRWPVNQDAAGY
EAVHLSMLSGLLGNIGFKTDEGDGYLGARGIRFHPHPGAHLSKKPGRWIVAAELVETSRL
YGRGIATIEPQWLEQVGAHLLRKQLLDPHWEKKQGEVAAYERATLYGLVVYSQRRISYGK
IDPQGARDIFIRQALVEGDWETRLPFLAANQKMIAKVEELEHKSRRQDVLVDDQLIYAFY
DQQIPQDVCTGRALERWFKDASAQNPDLLRLSRDELMRHEAAGITTASFPKTIKLGGVDC
TASYLHQPGDPRDGVTVTVPLFVLNQVSEERAEWLVPGMLKDKIQALLKSLPQRPRSRFV
PLAENAQRLAELLGAGERFGDGSLTEVLLKQARDETSLDIKRADFKLDMLSPHLFMNFRI
TDEHGRQLGQGRNLGALKAQWGAKARGAFQALASLKIAGSAGELAGSDEKPAEASVKKAQ
PAPEKEAAQSRKAQQAPSMPAEARHTDWSFGELPELMEIKKGSQTLIGFPALIDHGSAVG
IEVFDEPEVAASRHALGLRRLFALQIKDALKYLEKNIPDLQKMAVAYMPLGTQEELREQI
INVAIDRAFLQEPLPMNAEQFKQRVQDGRGRLTLIANEVARMAAGILQEYMAAVRKIKDT
KNAPDATQDAQQQLQKLMPKNFIAVAPWAQLGHYARYLKAITARLDKYRADPARDATRQK
ELQPLEQRYWRLVAERKGQVDARMQEYRWMLEELRVSFFAQELRTPYPVSTKRLDKVWAQ
LQQ |
|---|
| NT seq |
4152 nt +upstreamnt +downstreamnt
atgtctttgcagatcacgtttcccgaatcgctccccgtctccgcccgccgtgaagaaatc
atggaggccatggagcgccaccaggtcatcatcgtttgcggcgaaacggggtcgggcaaa
accacgcagctgcccaagattgcgctggcgctggggcggggaaagctcaatgcaacgccc
agtgataaatggcccccacgctcctccgctgcgcgtgattcgctgccccccgagggggcg
ccttccatcctggggcggcccggcgatggaaaaggtgaagtgcgcggccacctgatcggc
cacacccagccgcgccgcattgcagccagcagcgtggccaagcgcattgccgaagagctg
aacacgccgctgggcgaagtggtgggctacaaggtgcgctttcaggaccgtctgtccaag
gacgcctccgtcaagctgatgaccgacggtatcctgctggccgagacgcagaccgatccg
ctgctcaggcagtacgacaccctgatcatcgacgaggcgcatgagcgcagcctgaacatc
gattttctgctgggctacatccgccagatcctgcccaagcgcccggatctgaaagtggtg
gtgacttcggccaccatcgatgcggaccgctttgccaagcacttcgagtccaagagcggg
cccgcgccggtcatcatggtgtctggccgcacctacccggtggagatgcgctaccgcccg
tttgaagatgccaaggactacgacctgaacgacgcgattgccgatggcgtggatgagctg
tggcagggtggcagtgggggcgacatcctgatctttctgcccggcgagcgtgaaatccgc
gaggcggccgatcacctgcgcaagcacctgcagcactcgccggtattgcgcaacgccgag
gtgttgccgctgttctcgcgcctgtcgcaggccgagcaggaccgcatttttgaaggccac
accggccggcgcatcgtgctggccaccaatgtggccgaaacctcgctcacagtgccgggc
atccgttatgtgattgatgcaggaaccgcgcgtgtcaaacgctattcattccgtagcaag
gtggagcagctgctggttgagcccatcagccaggcggcggccaaccagcgggcggggcgt
tgtggccgcgtagccaacggcatctgcatccgcctgtatgacgaggcagatttcaacagc
cgcgcgcgctttaccgatccggaaatcctgcgctcgtcgctcgccggcgtcattttgcgc
atgaaggcgctgcgcctgggcgatgtggtgcattttccgtttctggaggcaccctcgggc
cgcgcgattgccgatggctaccagctgctgcaggagctgggcgcggtagacgaccagggc
gagctgctgcccatgggcaaggagctgtcgcgcctgccgctggacccgcgcgtggcgcgc
atgattgtggaggcgcgcgagcgcggtgcgctggccgaggtgctggtgattgcagctgca
ttgagcgtgcaggacgtgcgtgatcgcccgctggaggcccagcagcaggccgaccagcag
catgccaagttcgacgacgagaaaagcgaattcagcggctacctgcggctttggaaatgg
ctggcggatgcgcgcggcggcaaggtggtggccaaaacccgcaaggaaatggccgcgcag
gctgcgcccgtcaagggcctggccaacctgcgcaatgccgcttttttgccggtggcccag
cgcagctcgggtgcaactgccgtagctcaaacccagcaggcgccgctggcagccttcacc
ccgcaggacgccgtggccgacgaagccacgcacaagctcagcaaccgccagtgggagcag
ttgctgcgccagaattgcatcaacatccgccgtgtgcgcgagtggcgcgatatccattcg
cagctgctcacggtggtgaacgagcagcgctggccggtgaaccaggacgcagcggggtac
gaggccgtgcacctgtccatgctctcgggcctgctcggcaacatcggcttcaagaccgac
gagggcgatggctatctgggcgcgcgcggcatccgcttccacccgcatccgggggcgcat
ctgtcgaaaaagccagggcgctggatcgtggcggccgagctggtagagacctcgcgcctg
tacggccgtggcattgccaccatcgagccgcaatggctggagcaggtaggcgcacacctg
ctgcgaaagcaattgctcgatccgcattgggagaagaagcagggcgaggtggctgcctac
gagcgcgcaacactgtatggcttggtggtgtacagccagcgccgcatcagctatggcaag
attgatccgcagggcgcgcgcgacatcttcatccgccaggccctggtggaaggcgattgg
gaaacgcgcctgccgttcctcgccgcgaaccagaagatgatcgccaaggtcgaagagctg
gagcacaagagccgccgccaggacgtgctggtggacgaccagttgatctacgccttttac
gaccagcagattccgcaggacgtgtgcaccggccgcgcgctggagcgctggttcaaggac
gcgagcgcgcagaacccggatctgctgcggctctcgcgcgatgagttgatgcgccacgag
gctgcgggtatcaccacggcatcctttcccaagaccatcaagttgggtggcgtggattgc
acggccagctacctgcaccagccgggcgatccacgcgatggcgtgacggtgaccgtaccg
ctttttgtgctgaaccaggtgagcgaagagcgtgccgagtggctggtgccgggcatgctc
aaggacaagatccaggccctgctcaagagcctgccgcaacggccgcgcagccgttttgtg
ccgctggccgaaaacgcacagcgcctggccgagttgctgggcgcgggcgagcgctttggc
gatggaagcttgacggaggtgctgctcaagcaggcgcgcgatgagacctcgctcgacatc
aagcgcgcggatttcaagctcgacatgctcagcccgcatctgttcatgaacttccgcatc
accgacgagcacggccgccagttgggccagggccgcaacctgggtgcattgaaggcccag
tggggcgccaaggcgcgtggcgccttccaggcgctggcttcattaaagatagcgggcagc
gccggtgagttggcgggttccgatgaaaaaccagctgaagcgagcgtaaagaaagcgcag
cctgctcctgaaaaggaagccgcccaatcacgcaaggcgcagcaggcccccagcatgcct
gcggaggcgcgccacacggactggagttttggtgagctgcctgagttgatggagatcaag
aagggcagccagaccctgattggttttcctgcgctgatcgaccatggcagcgccgtcggc
atcgaggtgttcgacgagcctgaggtggccgcgagccgccacgcgctgggcctgcggcgc
ctgtttgcactgcagatcaaggatgcgctcaagtacctggaaaagaacattcccgatctg
cagaagatggccgtggcctacatgccgctgggtacgcaggaagagctgcgcgagcagatc
atcaatgtggccattgaccgcgcttttctacaagagccgctgccgatgaatgccgagcag
ttcaagcagcgcgtgcaggacggccgggggcgcctgaccctgatcgccaacgaggtggcg
cgcatggccgccggcattctgcaggaatacatggcggcggtgcgcaagatcaaggacacc
aagaatgcgccggacgccacgcaggacgcgcagcagcagttgcagaaactgatgcccaag
aacttcatcgccgtggcgccctgggcgcagctgggccactatgcgcgctacctcaaggcg
atcaccgcgcgcctggacaagtaccgcgcagacccagcccgcgacgccaccaggcaaaaa
gagttgcagccgctggagcagcgatactggcgcctggttgccgagcgcaaggggcaggtg
gatgcccgcatgcaggaataccgctggatgctggaggagctgcgcgtgagcttcttcgcg
caggagctgcgcacgccatacccggtcagcaccaagcggctggacaaggtgtgggcccag
ttgcagcagtga |
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