Comamonas odontotermitis: LAD35_07540
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Entry
LAD35_07540 CDS
T07833
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
codo
Comamonas odontotermitis
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
codo03019
]
LAD35_07540 (hrpA)
Enzymes [BR:
codo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LAD35_07540 (hrpA)
Messenger RNA biogenesis [BR:
codo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LAD35_07540 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
WHD_HA2
AAA_22
nSTAND3
AAA_23
NACHT
T2SSE
AAA_25
nSTAND_NTPase5
PhoH
SRP54
Motif
Other DBs
NCBI-ProteinID:
UBB18477
LinkDB
All DBs
Position
1608251..1612402
Genome browser
AA seq
1383 aa
AA seq
DB search
MSLQITFPESLPVSARREEIMEAMERHQVIIVCGETGSGKTTQLPKIALALGRGKLNATP
SDKWPPRSSAARDSLPPEGAPSILGRPGDGKGEVRGHLIGHTQPRRIAASSVAKRIAEEL
NTPLGEVVGYKVRFQDRLSKDASVKLMTDGILLAETQTDPLLRQYDTLIIDEAHERSLNI
DFLLGYIRQILPKRPDLKVVVTSATIDADRFAKHFESKSGPAPVIMVSGRTYPVEMRYRP
FEDAKDYDLNDAIADGVDELWQGGSGGDILIFLPGEREIREAADHLRKHLQHSPVLRNAE
VLPLFSRLSQAEQDRIFEGHTGRRIVLATNVAETSLTVPGIRYVIDAGTARVKRYSFRSK
VEQLLVEPISQAAANQRAGRCGRVANGICIRLYDEADFNSRARFTDPEILRSSLAGVILR
MKALRLGDVVHFPFLEAPSGRAIADGYQLLQELGAVDDQGELLPMGKELSRLPLDPRVAR
MIVEARERGALAEVLVIAAALSVQDVRDRPLEAQQQADQQHAKFDDEKSEFSGYLRLWKW
LADARGGKVVAKTRKEMAAQAAPVKGLANLRNAAFLPVAQRSSGATAVAQTQQAPLAAFT
PQDAVADEATHKLSNRQWEQLLRQNCINIRRVREWRDIHSQLLTVVNEQRWPVNQDAAGY
EAVHLSMLSGLLGNIGFKTDEGDGYLGARGIRFHPHPGAHLSKKPGRWIVAAELVETSRL
YGRGIATIEPQWLEQVGAHLLRKQLLDPHWEKKQGEVAAYERATLYGLVVYSQRRISYGK
IDPQGARDIFIRQALVEGDWETRLPFLAANQKMIAKVEELEHKSRRQDVLVDDQLIYAFY
DQQIPQDVCTGRALERWFKDASAQNPDLLRLSRDELMRHEAAGITTASFPKTIKLGGVDC
TASYLHQPGDPRDGVTVTVPLFVLNQVSEERAEWLVPGMLKDKIQALLKSLPQRPRSRFV
PLAENAQRLAELLGAGERFGDGSLTEVLLKQARDETSLDIKRADFKLDMLSPHLFMNFRI
TDEHGRQLGQGRNLGALKAQWGAKARGAFQALASLKIAGSAGELAGSDEKPAEASVKKAQ
PAPEKEAAQSRKAQQAPSMPAEARHTDWSFGELPELMEIKKGSQTLIGFPALIDHGSAVG
IEVFDEPEVAASRHALGLRRLFALQIKDALKYLEKNIPDLQKMAVAYMPLGTQEELREQI
INVAIDRAFLQEPLPMNAEQFKQRVQDGRGRLTLIANEVARMAAGILQEYMAAVRKIKDT
KNAPDATQDAQQQLQKLMPKNFIAVAPWAQLGHYARYLKAITARLDKYRADPARDATRQK
ELQPLEQRYWRLVAERKGQVDARMQEYRWMLEELRVSFFAQELRTPYPVSTKRLDKVWAQ
LQQ
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgcagatcacgtttcccgaatcgctccccgtctccgcccgccgtgaagaaatc
atggaggccatggagcgccaccaggtcatcatcgtttgcggcgaaacggggtcgggcaaa
accacgcagctgcccaagattgcgctggcgctggggcggggaaagctcaatgcaacgccc
agtgataaatggcccccacgctcctccgctgcgcgtgattcgctgccccccgagggggcg
ccttccatcctggggcggcccggcgatggaaaaggtgaagtgcgcggccacctgatcggc
cacacccagccgcgccgcattgcagccagcagcgtggccaagcgcattgccgaagagctg
aacacgccgctgggcgaagtggtgggctacaaggtgcgctttcaggaccgtctgtccaag
gacgcctccgtcaagctgatgaccgacggtatcctgctggccgagacgcagaccgatccg
ctgctcaggcagtacgacaccctgatcatcgacgaggcgcatgagcgcagcctgaacatc
gattttctgctgggctacatccgccagatcctgcccaagcgcccggatctgaaagtggtg
gtgacttcggccaccatcgatgcggaccgctttgccaagcacttcgagtccaagagcggg
cccgcgccggtcatcatggtgtctggccgcacctacccggtggagatgcgctaccgcccg
tttgaagatgccaaggactacgacctgaacgacgcgattgccgatggcgtggatgagctg
tggcagggtggcagtgggggcgacatcctgatctttctgcccggcgagcgtgaaatccgc
gaggcggccgatcacctgcgcaagcacctgcagcactcgccggtattgcgcaacgccgag
gtgttgccgctgttctcgcgcctgtcgcaggccgagcaggaccgcatttttgaaggccac
accggccggcgcatcgtgctggccaccaatgtggccgaaacctcgctcacagtgccgggc
atccgttatgtgattgatgcaggaaccgcgcgtgtcaaacgctattcattccgtagcaag
gtggagcagctgctggttgagcccatcagccaggcggcggccaaccagcgggcggggcgt
tgtggccgcgtagccaacggcatctgcatccgcctgtatgacgaggcagatttcaacagc
cgcgcgcgctttaccgatccggaaatcctgcgctcgtcgctcgccggcgtcattttgcgc
atgaaggcgctgcgcctgggcgatgtggtgcattttccgtttctggaggcaccctcgggc
cgcgcgattgccgatggctaccagctgctgcaggagctgggcgcggtagacgaccagggc
gagctgctgcccatgggcaaggagctgtcgcgcctgccgctggacccgcgcgtggcgcgc
atgattgtggaggcgcgcgagcgcggtgcgctggccgaggtgctggtgattgcagctgca
ttgagcgtgcaggacgtgcgtgatcgcccgctggaggcccagcagcaggccgaccagcag
catgccaagttcgacgacgagaaaagcgaattcagcggctacctgcggctttggaaatgg
ctggcggatgcgcgcggcggcaaggtggtggccaaaacccgcaaggaaatggccgcgcag
gctgcgcccgtcaagggcctggccaacctgcgcaatgccgcttttttgccggtggcccag
cgcagctcgggtgcaactgccgtagctcaaacccagcaggcgccgctggcagccttcacc
ccgcaggacgccgtggccgacgaagccacgcacaagctcagcaaccgccagtgggagcag
ttgctgcgccagaattgcatcaacatccgccgtgtgcgcgagtggcgcgatatccattcg
cagctgctcacggtggtgaacgagcagcgctggccggtgaaccaggacgcagcggggtac
gaggccgtgcacctgtccatgctctcgggcctgctcggcaacatcggcttcaagaccgac
gagggcgatggctatctgggcgcgcgcggcatccgcttccacccgcatccgggggcgcat
ctgtcgaaaaagccagggcgctggatcgtggcggccgagctggtagagacctcgcgcctg
tacggccgtggcattgccaccatcgagccgcaatggctggagcaggtaggcgcacacctg
ctgcgaaagcaattgctcgatccgcattgggagaagaagcagggcgaggtggctgcctac
gagcgcgcaacactgtatggcttggtggtgtacagccagcgccgcatcagctatggcaag
attgatccgcagggcgcgcgcgacatcttcatccgccaggccctggtggaaggcgattgg
gaaacgcgcctgccgttcctcgccgcgaaccagaagatgatcgccaaggtcgaagagctg
gagcacaagagccgccgccaggacgtgctggtggacgaccagttgatctacgccttttac
gaccagcagattccgcaggacgtgtgcaccggccgcgcgctggagcgctggttcaaggac
gcgagcgcgcagaacccggatctgctgcggctctcgcgcgatgagttgatgcgccacgag
gctgcgggtatcaccacggcatcctttcccaagaccatcaagttgggtggcgtggattgc
acggccagctacctgcaccagccgggcgatccacgcgatggcgtgacggtgaccgtaccg
ctttttgtgctgaaccaggtgagcgaagagcgtgccgagtggctggtgccgggcatgctc
aaggacaagatccaggccctgctcaagagcctgccgcaacggccgcgcagccgttttgtg
ccgctggccgaaaacgcacagcgcctggccgagttgctgggcgcgggcgagcgctttggc
gatggaagcttgacggaggtgctgctcaagcaggcgcgcgatgagacctcgctcgacatc
aagcgcgcggatttcaagctcgacatgctcagcccgcatctgttcatgaacttccgcatc
accgacgagcacggccgccagttgggccagggccgcaacctgggtgcattgaaggcccag
tggggcgccaaggcgcgtggcgccttccaggcgctggcttcattaaagatagcgggcagc
gccggtgagttggcgggttccgatgaaaaaccagctgaagcgagcgtaaagaaagcgcag
cctgctcctgaaaaggaagccgcccaatcacgcaaggcgcagcaggcccccagcatgcct
gcggaggcgcgccacacggactggagttttggtgagctgcctgagttgatggagatcaag
aagggcagccagaccctgattggttttcctgcgctgatcgaccatggcagcgccgtcggc
atcgaggtgttcgacgagcctgaggtggccgcgagccgccacgcgctgggcctgcggcgc
ctgtttgcactgcagatcaaggatgcgctcaagtacctggaaaagaacattcccgatctg
cagaagatggccgtggcctacatgccgctgggtacgcaggaagagctgcgcgagcagatc
atcaatgtggccattgaccgcgcttttctacaagagccgctgccgatgaatgccgagcag
ttcaagcagcgcgtgcaggacggccgggggcgcctgaccctgatcgccaacgaggtggcg
cgcatggccgccggcattctgcaggaatacatggcggcggtgcgcaagatcaaggacacc
aagaatgcgccggacgccacgcaggacgcgcagcagcagttgcagaaactgatgcccaag
aacttcatcgccgtggcgccctgggcgcagctgggccactatgcgcgctacctcaaggcg
atcaccgcgcgcctggacaagtaccgcgcagacccagcccgcgacgccaccaggcaaaaa
gagttgcagccgctggagcagcgatactggcgcctggttgccgagcgcaaggggcaggtg
gatgcccgcatgcaggaataccgctggatgctggaggagctgcgcgtgagcttcttcgcg
caggagctgcgcacgccatacccggtcagcaccaagcggctggacaaggtgtgggcccag
ttgcagcagtga
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