Comamonas odontotermitis: LAD35_09720
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Entry
LAD35_09720 CDS
T07833
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
codo
Comamonas odontotermitis
Pathway
codo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LAD35_09720 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
codo03400
]
LAD35_09720 (sbcB)
Enzymes [BR:
codo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LAD35_09720 (sbcB)
DNA repair and recombination proteins [BR:
codo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LAD35_09720 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LAD35_09720 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LAD35_09720 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UBB18874
LinkDB
All DBs
Position
2087356..2088813
Genome browser
AA seq
485 aa
AA seq
DB search
MQTPQPAQATFFWHDYETFGAVPRRDRPSQFAGIRTDMDLNEVGEPVMLFCQPAPDYLPS
PQACLITGITPQQCLEQGVPEHEFAAVVEAELGHPGTIGVGYNTIRFDDEVTRYMLWRNL
RDPYAREWQNGCGRWDLLDVVRMVYALRPDGITWPKKEDGSVSFKLEDLARANGILHESA
HDALSDVRATIGLARLIKRLQPRLFDFALGLHKKDRVMQELALPATAAHARPFLHISGMF
GVERGCIAVMWPLAQHPTNKNEVIAWDLAQDPSQLAELSVEDIRLRMFTASADLPEGVER
LPIKTVHLNKSPMVVSSLRTLSAEQAARWHIDMERALQYAAVARDLPDMSATWAAVFQRP
ALQDVDVDQDLYGGFIGQADRRRLTQLTAMHPQELAVARPGFDDERLQELLFRYRARNFP
DSLSAAEQARWQALRAAFLLQGEGGARTAEQMFAEIDQLSETADERAEELLGLLYDYADA
IVPDA
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgcagacaccacagcccgcacaggccaccttcttctggcacgactacgaaacctttggc
gccgtgccgcgccgcgaccgtccatcccagtttgccggcattcgcaccgacatggatctg
aacgaggtgggcgagcccgtcatgctgttctgccagcctgcgcccgattacctgcccagc
ccccaggcctgcctgatcaccggaatcaccccgcagcaatgcctggagcagggcgtgccc
gagcacgagtttgccgccgtggtggaggccgaactgggccaccccggcaccattggcgtg
ggctacaacaccatccgttttgacgacgaggtgacgcgctacatgctgtggcgcaacctg
cgcgacccctacgcgcgtgaatggcagaacggctgcggccgctgggatctgcttgatgtc
gtgcgcatggtctatgcgctgcggcccgatggcatcacctggcccaaaaaggaagacggc
tcggtcagcttcaagctcgaagacctggcccgtgccaacggcatcctgcatgaatcggcc
cacgatgcgcttagcgacgtgcgcgccaccatcggtctggcgcggctcatcaagcgcttg
caaccgcgtctgttcgactttgcgctgggcctgcacaagaaggaccgcgtgatgcaggag
ctggctctgcccgccacggctgcccacgcgcggccatttctgcacatctcgggcatgttc
ggcgtggagcgcggctgcattgccgtcatgtggccgctcgcccagcaccccaccaacaag
aacgaggtgatcgcctgggatctggcgcaggacccgtcgcagctcgccgagctttcggta
gaagacatccgcctgcgcatgttcactgccagcgccgacctgcccgaaggcgtggagcgc
ctgccgatcaagaccgtgcacctgaacaaatcgcccatggtcgtcagcagcctgcgcacc
ctgagcgccgagcaggccgcgcgctggcacatcgacatggagcgcgccctgcaatacgct
gctgtcgcccgcgatctgccggatatgagcgccacctgggccgccgtgttccagcgcccg
gccttgcaggatgtggatgtggaccaggacctgtacggcggcttcatcggccaggccgac
cgcaggcgcctgacccagctgactgccatgcacccgcaggagctggcggtggccaggccc
gggttcgacgacgagcggctgcaggagctgctcttccgctaccgggcacgcaattttccg
gattcgctcagcgccgccgaacaggcgcgctggcaggccctgcgggcagcctttctgctg
caaggcgagggcggtgcccgcacggccgaacagatgtttgccgaaatcgaccagctgtcg
gaaaccgccgatgagcgcgcagaagaactgctgggcctgctctatgactacgccgacgcc
atcgtgccggacgcatga
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