Comamonas odontotermitis: LAD35_13955
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Entry
LAD35_13955 CDS
T07833
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
codo
Comamonas odontotermitis
Pathway
codo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
codo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAD35_13955 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
codo03021
]
LAD35_13955 (rho)
03019 Messenger RNA biogenesis [BR:
codo03019
]
LAD35_13955 (rho)
Transcription machinery [BR:
codo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LAD35_13955 (rho)
Messenger RNA biogenesis [BR:
codo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LAD35_13955 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA
AAA_25
S1CSD-TOTE-2
Spore_III_AA
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
UBB15939
LinkDB
All DBs
Position
3022151..3023413
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKLADELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSLDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVN
GLPPEQNKHKMMFENLTPLFPKEQMRLERDIKAEENITGRLIDIIAPIGRGQRALIVAPP
KSGKTMMMQSIAHAITANYPDVHMMVLLVDERPEEVTEMQRSVKGEIIASTFDEPAARHV
HVAEMVIERAKRLVEMGKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELHLNRRLYEKRVFPAIEL
NKSGTRREELLLSPEILQKTRILRQFMYNMDEIESMEMVIKSMKATKNNTEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaatgagctcaaggcactgcatgtgtctgaagtcctcaagctggcagacgag
cttgagattgaaaataccggccgcatgcgcaaacaggaattgatgtttgcgattatcaaa
aagcgggccaaggccggtgaacaggtgtttgccgacggcgttctggaaatcctgcccgat
ggattcggctttttacgcagcctcgacacgagcttcactgccagcaccgacgatatctac
atctcccccagccaggtccgtcgattcaacctgcatacgggtgacatgattgaaggtgaa
gtacgcacgcccaaggatggcgagcgctactttgcactgaccaagctcgacaaggtcaac
ggcctgccccccgagcagaacaagcacaagatgatgttcgagaacctgacgcccctgttc
cccaaggaacagatgcgcctggagcgcgacatcaaggccgaggaaaacatcaccggccgc
ctgatcgacatcatcgcccccattggccgtggccagcgcgcgctgatcgttgccccgccc
aagagcggcaagacgatgatgatgcaaagcatcgcccacgccatcaccgccaactatccg
gatgtgcacatgatggtgctgctggtggacgagcgtccggaagaagtgaccgagatgcag
cgctcggtcaagggcgaaatcatcgcatccaccttcgatgagcctgcggcccgccacgta
cacgtggccgaaatggtgatcgaacgcgccaagcgcctggtcgaaatgggcaaggacgtc
gtcatcctgctcgactccatcacgcgtctggcccgcgcctacaacaacgtcgtgccttcg
tcgggcaaggtgctgtcgggtggtgtggactccaacgcactgcagcgccccaagcgcttc
ttcggtgccgcgcgcaatgtagaagaaggcggctcgctcaccatcatcgccaccgcgctg
gtcgacaccggcagccgcatggacgaagtgatctttgaagaattcaagggcaccggcaac
agcgaactgcacctgaaccgccgcctctacgaaaagcgcgtgttcccggccattgagctc
aacaagagcggcacacgccgcgaagagttgctgctgtcgccggaaatcctgcaaaagacc
cgcatcctgcgccaattcatgtacaacatggacgaaatcgaatccatggaaatggtcatc
aagagcatgaaggccacgaagaacaacaccgaattcttcgacatgatgcgccggggcggc
taa
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