Comamonas flocculans: FOZ74_01720
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Entry
FOZ74_01720 CDS
T06146
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cof
Comamonas flocculans
Pathway
cof02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cof00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FOZ74_01720 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cof03021
]
FOZ74_01720 (rpoD)
Transcription machinery [BR:
cof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FOZ74_01720 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF6522
DUF6819
Motif
Other DBs
NCBI-ProteinID:
QEA11855
UniProt:
A0A5B8RUF2
LinkDB
All DBs
Position
331710..334115
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AA seq
801 aa
AA seq
DB search
MPARKSATPVADSTSKKKTKAAATEPSAKKAAKASDEAAEKKPLSGARAGKTSAAKTAAK
TPAAKSAAAKKTTTKDTAAKSAAGKSAAGKSTTKSETAKPAKPAAKSKGPARPKAAAKGK
AKGKSKAELDDDADLSDIEADLEGEPEPETPPAAETAPAEKVKPLRMKISKAKERALMKE
FGLDETILSEEDMAKRRAQLKKLITLGKTRGYLTQGEISDHLPDKLVDAETMEAVASLLS
DMGVAIYEQTPDAETLFQNNVTPTATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYMREM
GTVELLTREGEIEIAKRIEGGLMDMMEAISASPATIAEILNMGEEIREGKVIINTIVDGF
ADPEEADDYVAEEDYDEYDDEDDDDGKGGSKAMTRLLEKLKNDALERFDELRALFEKMHK
IYDKEGYGTPAYMKVQREISTKLMTIRFTAKTIEKLCDMVRVQVDDVRKKERDLRRIIVD
KCGMPQETFIKEFPPNLLNLRWVEKQAAAGKPWSTVLERNIPPVQELQQGLIDLQTRVVV
PLTELKAIHKRMNEGERSSRHAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQE
FGFEPDASLLAEKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDQNNTAPVD
AAMQAGLRDVVKDILDGLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLKHPSRSDKLRSFIDSL
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgccagctcgaaagtccgccacgcctgtcgccgacagcaccagcaagaagaagaccaag
gccgctgccacggagcccagcgccaagaaggccgccaaggcaagcgatgaagccgccgag
aaaaagccgctgagcggcgcgcgcgccggcaagaccagcgctgccaagaccgcggccaag
acgcctgccgccaagagcgcagcggccaagaaaaccacaaccaaggacaccgcggccaag
agcgcggcgggcaagagcgcggcgggcaagagcaccaccaagagcgaaaccgccaagccg
gccaagcccgccgccaagtccaagggtcccgcacgccccaaggccgctgccaagggcaag
gccaaaggcaagtccaaggccgagctcgacgacgacgccgacctgtcggacatcgaggcc
gacctggagggtgaacccgagccggaaaccccgccggctgccgagaccgcgccagccgag
aaggtcaagcccctgcgcatgaagatcagcaaggccaaggagcgggccttgatgaaggaa
ttcggcctggatgaaaccatcctgtccgaagaagacatggccaagcgccgcgcccagctc
aagaagctgatcacgctgggcaagacgcgcggctacctcacgcagggcgaaatttccgac
cacctgcccgacaagctggtggacgccgaaaccatggaagccgtggcctcgctgctcagc
gacatgggcgtggccatctacgagcagacgcccgacgccgagacgctgttccagaacaac
gtgacgcccaccgccaccaccgtggaagaggccgaggaagaggccgaagcagcgctgtcc
accgtggacagcgagttcggccgcaccaccgacccggtgcgcatgtacatgcgcgagatg
ggcacggtggagctgctcacgcgcgagggcgaaatcgagatcgccaagcgcatcgagggc
ggcctcatggacatgatggaagccatcagcgccagtcccgccaccatcgccgaaatcctc
aacatgggcgaggaaatccgcgaaggcaaggtcatcatcaacaccatcgtggacggcttt
gccgaccccgaggaagccgatgactacgtcgccgaggaagactacgacgagtacgacgac
gaggacgacgacgacggcaagggcggctccaaggccatgacgcgcctgctggaaaagctc
aagaacgatgcgctggagcgctttgacgagctgcgcgcactgttcgagaagatgcacaag
atctacgacaaggaaggctatggcacgccggcctacatgaaggtacagcgcgagatctcg
accaagctgatgaccatccgcttcaccgccaagaccatcgaaaagctctgcgacatggtg
cgcgtgcaggtggacgacgtgcgcaagaaggaacgcgacctgcgccgcatcatcgtggac
aagtgcggcatgccgcaggagaccttcatcaaggagttcccgcccaatctgctgaacctg
cgctgggtggaaaagcaggccgccgccggcaagccctggagcaccgtgctcgagcgcaac
atcccgccggtgcaggaactgcagcagggcctgatcgacctgcagacgcgcgtcgtcgtg
ccgctcaccgagctcaaggccatccacaagcgcatgaacgaaggcgagcgctccagccgc
cacgccaagaaggaaatgatcgaggccaacctgcgcctggtcatctcgattgccaagaag
tacaccaaccgcgggctgcagttcctcgacctcattcaagaaggcaacatcggcctgatg
aaggcggtggacaagttcgaataccgccgcggctacaagttctcgacctacgccacctgg
tggatccgccaggcgatcacgcgctcgatcgccgaccaggcgcgcaccatccgcatcccg
gtgcacatgatcgagaccatcaacaagatgaaccgcatctcgcgccagcacctgcaggag
ttcggcttcgagcccgacgccagcctgctggccgagaagatggagatccccgaggacaag
atccgcaagatcatgaagatcgccaaggagccgatctcgatggaaacgcccatcggggac
gacgacgacagccacctgggcgacttcatcgaggaccagaacaacaccgcgccggtggac
gccgccatgcaggccggcctgcgcgacgtggtcaaggacatcctggacggcctcaccccg
cgcgaagccaaggtgctgcgcatgcgcttcggcatcgagatgtccaccgaccacacactg
gaggaagtgggcaagcagttcgacgtgacgcgcgagcgcatccgccagatcgaagccaag
gcgctgcgcaagctcaagcaccccagccgcagcgacaagctgcgcagcttcatcgattcg
ctgtag
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integrated database retrieval system
