Comamonas flocculans: FOZ74_12655
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Entry
FOZ74_12655 CDS
T06146
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cof
Comamonas flocculans
Pathway
cof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOZ74_12655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cof03019
]
FOZ74_12655
Enzymes [BR:
cof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOZ74_12655
Messenger RNA biogenesis [BR:
cof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOZ74_12655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QEA13812
UniProt:
A0A5B8RYU9
LinkDB
All DBs
Position
2649351..2650793
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AA seq
480 aa
AA seq
DB search
MTTLYQSVALADPLQRAVADMGYETMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALP
LLQRMLAHENTSASPARHPVRALVLLPTRELADQVAEQVKLYAKYTQLRSTVVFGGMDMK
PQTAELKKGVEVLVATPGRLLDHIEARNVVLNHVEYVVLDEADRMLDIGFLPDLQRILSY
LPRERTTLLFSATFSPEIKRLAASYLHDPVTIEVARPNATASTVEQCFYGVGEEGKRAAI
RQVLRERQLTQAFIFVNSKLGCARLARSLARDGLKTAALHGDKSQDERLKALEAFKSGEV
DLLVCTDVAARGLDIKDVPAVFNHDVPFNAEDYVHRIGRTGRAGASGLAVTLVTERDARL
MGELEKLLKKKVEVQPLQLRDERSPLRHGDSRHREGTHGARGERDGMRSSRNHRHAAPGF
VPSRDPFFDRPYEPGSAPEAAPSWEQPPAAARPRVSSNIKQRRVLPALFKAPQASEENAA
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgctttaccaatcagtagcgctggctgaccccctgcagcgcgccgtagccgac
atgggctacgaaaccatgacccccatccaggcacaggccataccggtggtactcaccggc
aaggacgtgatgggtgcggcccagaccggtaccggcaagaccgcggccttcgcgctgccg
ctgctgcagcgcatgctggcgcacgagaacacctcggcctcgcccgcgcgccacccggtg
cgcgcgctggtgctgctgcccacgcgcgagctggccgaccaggtggccgagcaggtcaag
ctctacgccaagtacacgcagctgcgctccaccgtggtgttcggcggcatggacatgaag
ccgcagacggccgaactcaagaagggcgtggaggtgctggtggccacgccggggcgcctg
ctggaccacatcgaagccaggaacgtggtgctcaaccacgtggaatacgtggtgctcgac
gaggccgaccgcatgctggacatcggcttcctgccggacctgcagcgcatcctgtcctac
ctgcccagggagcgcaccacgctgctgttttcggccaccttctcgcccgagatcaagcgc
ctggcagcgagctacctgcacgacccggtgaccatagaggtggcacgccccaacgccacc
gcctccaccgtcgagcagtgcttctacggcgtgggtgaggaaggcaagcgcgccgccatc
cgtcaggtgctcagggagcggcagctcacccaggccttcatcttcgtcaacagcaagctc
ggctgcgcgcgcctggcgcgctcgctggcacgcgacgggctgaagaccgcggcgctgcac
ggcgacaagagccaggacgagcgcctgaaggcgctggaagccttcaagagcggcgaggtt
gacctgctggtctgcaccgacgtggccgcgcgcggcctggacatcaaggacgtgccggcg
gtgttcaaccacgacgtgccgttcaacgccgaggactacgtgcaccgcatcggccgcacc
ggccgcgccggcgcctcgggactggcggtgacgctggtgaccgagcgggacgcgcggctg
atgggcgagctcgagaagctgctcaagaaaaaggtcgaggtgcagcccctgcagctcagg
gacgagcgctcgcccctgcgccacggcgacagccgtcaccgcgagggcacgcacggtgcg
cgcggcgagcgcgatggcatgcgttcgtcgcgcaaccaccgccatgcggcgcccggcttc
gtgccctcgcgcgaccctttcttcgaccgtccctacgagcccggcagcgcgcccgaagcc
gcgcccagctgggaacagccgccggccgccgcacgcccccgggtgtcgtccaacatcaag
cagcggcgcgtgctgcctgcgctcttcaaggcgccgcaggcgagcgaggaaaacgccgcc
tga
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