Cohnella candidum: EAV92_05310
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Entry
EAV92_05310 CDS
T05696
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
coh
Cohnella candidum
Pathway
coh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAV92_05310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coh03019
]
EAV92_05310
Messenger RNA biogenesis [BR:
coh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EAV92_05310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AYQ72038
UniProt:
A0A3G3JUW6
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Position
1142712..1144391
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AA seq
559 aa
AA seq
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MSKKNNADKLLIFALGGVGEIGKNMYCIQYANDIVVVDAGLKFPEEEMLGIDVVIPDITY
LTDNREKVRGILVTHGHEDHIGGLPYVLKHLNVPVYGTKLTLGLIENKLKEAGLLGDTKR
ILINADSELTLGTIKASFFRTNHSIPDSVGVCLETPEGIVVHTGDFKFDHTPVNEQYADL
QRMAEIGKRGVLALLSDSTNAERPGFTPSESNIGREFEEIFRRAKQRVVVATFASNVHRI
QQVIDAAMETRRKMTVIGRSMVNIVTIASELGYLNIPEGMLIEPEEVNKLPADRVVVLST
GSQGEPMSALTRMARSTHRKIDILPGDTVVISATPIPGNEKYVGRTVDELMRLGASVIYG
PGSVSGVHVSGHGSQEELKLMLNLIRPEYFIPIHGEYRMLRHHGLLAEAVGIEKDKIFLI
DNGDTVEFQNGVGRKAGKIPAGNVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQ
DGTILSGPDIISRGFVYVRESEGLLEEANRIVTGTLHKLMNENVNEWASLKTNVKDALGR
FLYEQTKRRPMILPIIMEV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaagaagaacaacgcagacaaattgctgatttttgccctgggaggcgtcggcgag
attgggaaaaacatgtactgcatccagtacgcgaacgacatcgtcgtcgtggatgcgggc
ctgaaattcccggaagaggaaatgctcggcatcgacgtcgtcattccggatatcacgtac
ttgacggataaccgcgaaaaagtaagagggatcctcgttacccacgggcatgaggaccac
atcggcggcctgccttacgtcctgaaacatctgaacgtcccggtgtacggaaccaagctg
acgctcggcctgatcgagaacaagctgaaggaagcgggactgctcggagacacgaagcgc
attttgatcaacgccgactcggaattgacgctcggtacgatcaaagccagctttttccgc
acgaaccacagtattccggactccgtcggagtctgtctggaaacgccggaaggcatcgtc
gttcatacgggcgactttaaattcgaccatacgccggtgaacgagcagtacgccgacctg
cagcggatggcggaaatcggcaagcgcggcgtcctcgccctgctgtcggacagcacgaac
gcggaacgccccggcttcacgccgtcggagagcaacatcggccgtgaattcgaggagatt
ttccgccgtgccaagcagcgcgtcgtcgtggcgacgttcgcttcgaacgtgcaccggatc
cagcaggtcatcgatgcggcgatggaaacccggcgcaagatgacggtcatcggccgcagc
atggtcaacatcgtgacgatcgcttcggagctcggttacctgaacattccggaaggcatg
ctcatcgagcctgaagaagtgaacaagctccccgcggaccgcgtcgtcgttctgtcgacg
ggcagccaaggcgagccgatgtccgcgcttacgcgaatggctcgctctacgcatcgcaag
atcgacattttgccgggggatacggtcgtcatttcggcgacgccgatcccgggcaacgag
aaatacgtcggccgcacggtcgatgaattgatgcggctcggcgccagcgtcatttacgga
ccgggctcggtatccggcgtgcacgtttccggccacggcagccaggaagagctgaagctg
atgctcaacctgatccgtccggaatatttcatcccgatccacggcgaataccggatgctg
aggcatcacgggttgcttgccgaggccgtcggcatcgagaaggataaaattttcctgatc
gacaacggcgataccgtcgaattccagaacggcgtcggccgcaaagccggcaaaatcccg
gcgggcaacgtgctgatcgacggactgggcgtcggcgacgtggggaacatcgttctccgc
gaccggaagctgctgtcccaggacggcatcctggtcgtcgtcgtcacgctgagcaagcaa
gacggcacgattctgtccggaccggacatcatctcgcgcggtttcgtgtacgtgcgcgaa
tccgaagggctgctcgaggaagcgaaccgcatcgtgaccggcaccctgcataaattgatg
aacgaaaacgtgaacgagtgggcgtcgctgaagacgaacgtcaaagacgcgctcggacgt
ttcctgtacgaacaaacaaaaagaagaccgatgatcctgccaatcattatggaagtgtga
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