Cohnella candidum: EAV92_11530
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Entry
EAV92_11530 CDS
T05696
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
coh
Cohnella candidum
Pathway
coh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAV92_11530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coh03019
]
EAV92_11530
03009 Ribosome biogenesis [BR:
coh03009
]
EAV92_11530
Enzymes [BR:
coh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EAV92_11530
Messenger RNA biogenesis [BR:
coh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EAV92_11530
Ribosome biogenesis [BR:
coh03009
]
Prokaryotic type
rRNA helicases
EAV92_11530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
NAT10_TcmA_helicase
AAA_22
DeaD_dimer
AAA_19
UBA_HOIP
Motif
Other DBs
NCBI-ProteinID:
AYQ73140
UniProt:
A0A3G3JY08
LinkDB
All DBs
Position
complement(2441720..2443342)
Genome browser
AA seq
540 aa
AA seq
DB search
MSTFNEFGLDPDVIQAVSEMGFEEATPIQAKAIPVALEGRDMIGQAQTGTGKTAAFGIPL
INKISASEDRIVALIMAPTRELAIQVAEEIEKLGRFKGLRSLAIYGGQDISRQIRSLRRR
PQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQTLL
FSATMPTNIQRLAQQFLRNPEHISVIPKQVSAPLIQQFYIEVQERMKFDGLCRLLDMEPP
ELAIIFGRTKRRVAELSEALAKRGYASDGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTSWTFVTPREIDHLHFIEKITR
HRISKKPLPTLSEAMEGKQKVVAERILETVKGTEDEVNPYKWVAMQLLEQYDSVQLLAAA
MKLLTGDKKDVEVELTPEDPIRGKKRKFDGGRGGYGGGQGNRRYGQGGQGGGNYGGGGGY
RGGQGRSGNYGGGSGGQQRKPYGGGGGSRPYREDGGYRDGGSRGGRPEPRKSNSEDYVNI
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
ttgagtacatttaacgaatttggtttggatccggacgtcattcaagccgtctctgagatg
gggtttgaagaagcgacgccgatccaggccaaggcgattcccgtcgctctcgaaggccgc
gacatgatcggccaggcacagacggggaccggcaagacagctgcattcggcatccctctc
atcaacaaaatttcggcatcggaagaccgcatcgtcgcgctgatcatggcgccgacgcgc
gagctggccatccaggttgcggaagaaatcgagaaactcggacggttcaaaggactgcgc
tccttggcgatatacggcggacaagacatcagccgccaaatccgctctttgagaagaagg
ccgcaaatcatcatcggaacgcccggacggctgcttgaccatatcaatcgcaagacgatc
cgcttggatgacgttcagacggtggtcctggacgaagcggacgaaatgctggacatgggc
ttcatggaggacatccaatccatcctgaagctggtgccggaagagcggcagacgctgctg
ttctcggccacgatgccgacgaacatccagagactggctcagcagttcctgcgcaacccg
gaacatatctccgtcattccgaagcaggtcagcgctcctctcatccagcaattttacatc
gaagtccaagaacgcatgaaatttgacggcctgtgccggctgctcgacatggaaccgccg
gagctcgcgatcattttcggacgcacgaagcgccgcgtcgccgaattgtccgaagcgctg
gccaagcgcggctacgcttccgacggcttgcacggcgacctgtcccagaaccagcgtgac
gcggtcatgcgcaagttccgcgacggcagcatcgacgtgctcgtggcgacggacgtcgcg
gcccgcggccttgacgtcagcggcgtgacgcacgtcatcaacttcgacctgccgcaggat
ccggaaagctacgttcaccggatcggccggacgggacgcgcgggcaaggaaggaacgtcc
tggacgttcgtgacgccgcgcgagatcgaccatctgcacttcatcgagaaaatcacgcgg
caccgcatttccaagaagccgctcccgaccctttccgaggcgatggaaggcaaacagaaa
gtcgtggccgagcgcattttggaaacggtcaaaggaactgaagatgaagtgaatccgtac
aagtgggtagcgatgcagcttctcgaacagtacgattccgtccaattgctcgcggcggcg
atgaagctgctgaccggtgacaagaaagacgtcgaagtcgagctcacgccggaagatccg
atccgcggcaagaagcgcaagttcgacggcggccgcggcggctacggcggaggccaaggc
aaccgccggtacggtcaaggcggccaaggcggcggcaactacggcggaggcggcggttac
cgcggcggccaaggacgcagcggcaactacggcggcggctcgggcggacagcagcgcaag
ccttacggcggcggcggcggaagtcggccgtaccgcgaggacggcggctatcgcgacggc
ggatcccgcggcggacgtccggaaccgcgcaaatcgaacagcgaagattacgtgaacatc
taa
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